Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03235 ATGCCTTCACTCTCAGAAGCCTACCGAGCCCACCCCGTGCACGTTCAACACAAGCACCCTGACTTAAACTCCCTACAAGAACTCCCCGAGTCTTACACTTGGACACACCATAGCCATGATGATCATACTCCTGCAGCTTCCAACGAGAGTGTCCCCGTTATTGATCTCAACGACCCAAATGCTTCAAAGTTGATACACCATGCATGCATAACTTGGGGAGCGTACCAAGTGGTGAACCATGCCATACCCATGAGCCTCCTCCAAGACATTCAATGGGTTGGGGAGACACTCTTCTCTCTCCCTTGTCACCAAAAACAAAAAGCAGCTCGTTCCCCTGACGGTGCTGATGGCTATGGCCTTGCTCGCATCTCTTCCTTCTTCCCCAAACTCATGTGGTCTGAGGGATTCACAATTGTTGGATCCCCTCTTGAGCATTTTCGTCAACTCTGGCCCCAAGATTACCACAAATACTGTGATATCGTCAAGCGATATGATGAAGCCATGAAAAAGCTAGTGGGAAAGCTGATGTGGCTGATGTTGGATTCTCTGGGTATTACAAAGGAAGACCTGAAATGGGCCGGGTCCAAAGGCCAATTCAAAAAGACATGCGCAGCCTTGCAATTGAACTCTTACCCGACTTGTCCGGATCCGGATCGGGCCATGGGTCTGGCCGCCCACACCGACTCCACCCTTCTCACAATCCTTTACCAAAACAACATAAGCGGGTTGCAGGTTCACCGAAAAGGCGGCGGGTGGGTGACGGTGGCACCAGTCCCCGAAGGGCTTGTGATCAATGTAGGCGACCTCCTCCACATATTGTCGAACGGGTTGTACCCGAGTGTGCTCCACCGGGTCTTAGTGAACCGGATCCAGCAAAGGCTTTCAGTTGCGTATTTATGTGGGCCCCCTCCGAATGTGGAGATATGTCCACATGCGAAGCTAGTGGGCCCAAATAAGCCTCCCCTTTATAAGGCAGTGACTTGGAATGAGTACCTTGGCACTAAAGCAAAGCATTTCAACAAGGCACTCTCAACCGTTCGGCTTTGTGCACCTAGCTAG 1059 0.5118 MPSLSEAYRAHPVHVQHKHPDLNSLQELPESYTWTHHSHDDHTPAASNESVPVIDLNDPNASKLIHHACITWGAYQVVNHAIPMSLLQDIQWVGETLFSLPCHQKQKAARSPDGADGYGLARISSFFPKLMWSEGFTIVGSPLEHFRQLWPQDYHKYCDIVKRYDEAMKKLVGKLMWLMLDSLGITKEDLKWAGSKGQFKKTCAALQLNSYPTCPDPDRAMGLAAHTDSTLLTILYQNNISGLQVHRKGGGWVTVAPVPEGLVINVGDLLHILSNGLYPSVLHRVLVNRIQQRLSVAYLCGPPPNVEICPHAKLVGPNKPPLYKAVTWNEYLGTKAKHFNKALSTVRLCAPS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03235 352 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 3 340 - -
Gma13g03235 352 PANTHER GIBBERELLIN 3-BETA-DIOXYGENASE 1-LIKE 3 340 - -
Gma13g03235 352 Pfam 2OG-Fe(II) oxygenase superfamily 206 302 IPR044861 -
Gma13g03235 352 Gene3D - 15 333 IPR027443 -
Gma13g03235 352 MobiDBLite consensus disorder prediction 1 22 - -
Gma13g03235 352 Pfam non-haem dioxygenase in morphine synthesis N-terminal 51 151 IPR026992 -
Gma13g03235 352 MobiDBLite consensus disorder prediction 34 53 - -
Gma13g03235 352 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 201 302 IPR005123 -
Gma13g03235 352 SUPERFAMILY Clavaminate synthase-like 16 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03235 Gma-Chr13 46425320 46427463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g03235 25 343 Glycosyltransferase AT5G59530 27.988 2.68e-35 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03235 K04124 - gmx:100776755 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03235 13 46425320 46427463 Gma13g03235 13 46425320 46427463 ECH
Gma13g03235 13 46425320 46427463 Gma15g00120 15 980771 982299 GST
Gma13g03235 13 46425320 46427463 Gma07g00317 07 2692145 2695048 PCT
Gma13g03235 13 46425320 46427463 Gma08g01907 08 17176709 17178809 PCT
Gma07g00317 07 2692145 2695048 Gma13g03235 13 46425320 46427463 PCT
Gma08g01907 08 17176709 17178809 Gma13g03235 13 46425320 46427463 PCT