Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01907 ATGCCTTCTCTCTCGGAAGCCTTTAGAGGTCACCCCGTGTACCTTCATCAGAAACACCACGACTTCAACTCACTTCAAGAACTCCCTGACTCTTACGCTTGGACACAACCTGATGATGATGATCACCGTCTCACAAATTACCCTTCCAACAATAAGACTAAGACCGTTGTCCCCATCATCGATTTGAACGACCCAAATGCTCCAAACCTCATAGGCCATGCATGCAAAACATGGGGTGTGTTCCAAGTGGTGAACCATGGCATCCCCACGAGCCTCTTCAGTGACATTCAGAGGGCTAGTCTTGCTCTATTCTCCCTTCCTCTTCACCAGAAGCTCAAAGCAGCTCGCTCCCCCGACGGCGTCTCCGGCTACGGCCGCGCTCGCATTTCCTCCTTCTTCCCCAAGCTCATGTGGTCTGAGTGCTTCACAATTCTCGATTCCCCTCTTGATCTTTTCCTCAAACTCTGGCCACAAGACTATGCTAAATACTGTGATATTGTCGTGGAATATGAAGCAGCCATGAAAAAGCTAGCAGCGAAGTTAATGTGCCTTATGTTGGCTTCCCTTGGTATTCCCAAGGAAGACATTAAATGGGCTGGGCCGAAAGGAGAATTCAACGGGGCTTGTGCGGCTTTGCATTGGAATTCTTACCCGAGTTGCCCGGATCCGGATCGGGCCATGGGTCTGGCCGCGCACACGGACTCCACTCTCCTCACAATCCTGCACCAAAACAATGTCAATGGGCTTCAGGTTCTCAAGGAAGGGGAAGGGTGGGTGGCGGTGCCTCCGCTTCCCGGAGGGCTCGTGATCAACGTCGGCGATCTGCTCCACATTTTGTCAAACGGGTTGTACCCGAGTGTGCTGCATCGAGTTCGGGTGAACCGAACCCGGCAGAGGTTCTCGGTTGCTTATCTATATGGGCCCCCAACAAACGTCCAAATCAGTCCACAAGTAAAATTGGTAGGCCCAACAAGGCCCGTTCTTTATCGATCAGTGACTTGGAACGAGTACCTTGGCACCAAAGCAAAGCTTTTTAATAAGGCTCTTTCAGCTGTTAGGCTTTCTTCATCTATTAACGGTTTGTTTGATGTAAACGAGGATAAGAGTAACGACTTTCAAGTGGGCTAG 1128 0.5053 MPSLSEAFRGHPVYLHQKHHDFNSLQELPDSYAWTQPDDDDHRLTNYPSNNKTKTVVPIIDLNDPNAPNLIGHACKTWGVFQVVNHGIPTSLFSDIQRASLALFSLPLHQKLKAARSPDGVSGYGRARISSFFPKLMWSECFTILDSPLDLFLKLWPQDYAKYCDIVVEYEAAMKKLAAKLMCLMLASLGIPKEDIKWAGPKGEFNGACAALHWNSYPSCPDPDRAMGLAAHTDSTLLTILHQNNVNGLQVLKEGEGWVAVPPLPGGLVINVGDLLHILSNGLYPSVLHRVRVNRTRQRFSVAYLYGPPTNVQISPQVKLVGPTRPVLYRSVTWNEYLGTKAKLFNKALSAVRLSSSINGLFDVNEDKSNDFQVG 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01907 375 Pfam 2OG-Fe(II) oxygenase superfamily 213 308 IPR044861 -
Gma08g01907 375 Gene3D - 18 346 IPR027443 -
Gma08g01907 375 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 207 308 IPR005123 -
Gma08g01907 375 PANTHER GIBBERELLIN 3-BETA-DIOXYGENASE 1-LIKE 3 366 - -
Gma08g01907 375 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 3 366 - -
Gma08g01907 375 SUPERFAMILY Clavaminate synthase-like 15 344 - -
Gma08g01907 375 Pfam non-haem dioxygenase in morphine synthesis N-terminal 57 149 IPR026992 -
Gma08g01907 375 PRINTS Isopenicillin N synthase signature 71 88 - -
Gma08g01907 375 PRINTS Isopenicillin N synthase signature 268 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01907 Gma-Chr8 17176709 17178809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01907 71 337 Glycosyltransferase AT5G59530 31.786 2.43e-36 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01907 K04124 - gmx:100794180 763.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01907 08 17176709 17178809 Gma08g01907 08 17176709 17178809 ECH
Gma07g00317 07 2692145 2695048 Gma08g01907 08 17176709 17178809 GST
Gma13g03235 13 46425320 46427463 Gma08g01907 08 17176709 17178809 PCT
Gma15g00120 15 980771 982299 Gma08g01907 08 17176709 17178809 PCT
Gma08g01907 08 17176709 17178809 Gma13g03235 13 46425320 46427463 PCT
Gma08g01907 08 17176709 17178809 Gma15g00120 15 980771 982299 PCT