Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03140 ATGCAAATGGCGAACAATGAGAAATGTTGTTCCACTCAACTTATTGATGGAGATGGTGCATTCAATGTTGGCGGGATTGAAAACTTCATGAAAGAGGTTAAATTAAGTGAATGTGGGCTTTCCTATGCCGTAGTTTCTATTATGGGTCCACAAAGTAGTGGTATGCTTCGTGATCTCAATTTCGTTTCTTATTCTTTTCATGAGCAAATTTGTTGTGTAATTGCTTCTCCTAGTCAATTTGCACTTGAGGATGTGTCTCAAACAACCAGAGGAATTTGGATGGCTAGATGTGTTGGCATAGAGCCTTGTACACTTGTGATGGATTTGGAGGGTACTGATGGAAGAGAACGTGGAGAGGATGATACTACATTTGAAAAGCAAAGTGCTTTATTTGCTTTGGCTATCTCTGATATAGTGCTAATAAACATGTGGTGTCATGACATTGGTCGCGAACAAGCTGCAAATAAGCCGCTGTTAAAAACTGTGTTTCAGGTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAGACACCGCTTGAAAATTTAGAGCCTGTTTTGCGCGAAGATATTCAGAAGATATGGGACTCTGTTCCTAAACCAGATGCTCATAAAGAAACCCCATTAAGTGAATTTTTCATTGTTGAAGTTGTTGCTCTTTCTAGTTTCGAAGAAAAGGAAGAACAATTTAAGGAGCAGGTTGCCAACTTGAGGCAACGATTCTATCATTCTATCGCTCCAGGTGGGCTTGCAGGGGATCGGCGTGGAGTAGTTCCTGCTTCAGGCTTTTCTTTTAGTGCTCAAGAAATCTGGAAAATCATAAAGGAGAACAAGGATCTCGACCTTCCTGCCCACAAGGTAATGGTTGCTACTGTACGATGTGAAGAAATTGCTAACGAGAAATATGACCTTTTTGCTACAAATAAGGATTGGTGTGAGTTGGAAGAGGCTGTGCAATCTGGCCCTATTTCTGGATTTGGGAAAAAGCTCAATTCACTCATTACCACTTGTCTTTCAGAGTATGATGCTGAAGCCAACTATTTTGACGAAGGTGTGAGATCTGCAAAACAAAAGCAACTTCAAGAAAAATTGTTTCAACTTGTCCAACCAACATTCCAAATTGCGCTGGGACATATAAGGTCCGGAATTTTGGATAAGTTCAAGGAAGCATTTGACAAGGCATTGAATGGAGGGGAAGGGTTTTCATCTGCTGCCAATAAGTGCATAGAGTTTTATATGGCTCAGTTTGATGAAGGATGTGCAGATGTTGTTATTGAAATAGCAAACTGGGATACATCTAAAGGGAGGGAGAAGCTACAACGTGAAATTGATGCACATGTTGCATCCGTGCGAGCATCTAAGATGTCAGAACTTGTTTCATCATATGAGGAAAAACTAAAGGAGGCCTTGTCTGCACCTGTTGAAACTCTATTGGATGGAGCTAATAGTGATACTTGGCCATCAATAAGGAAACTTCTTAATCGTGAGACTCAATCAGCTGTTTCTGGGTTCTCTGTTGAACTTATCAGATTTGATGTGGATGAACAACAAAAAAAGAGCATGATTGTGAGTTTAGAGGATTATGCTAAGGGTGTGATAGAAGCCAAGGCTAGGGAAGAAGCTGGCAGAGTTCTAATAAGTATGAAGGACAGCAGGTTTATGACATTGTTTAGTCATGATTCTGATTCAATGCCTCGTATTTGGACGGGAAAAGAAGATGTTCGAGCCATCACCAAGTCTGCCCGCTCTTCCTGCTTGAAGTTGTTGTCTGTAATGGCTGTAATTCGCTTGGATGATGGTGATGACATTTATGACATCGAGAAAACATTAATAGTTGCATTGGCAGATTCATCAAGCAGTTATGCTAAAGATAAGAGCACCATGACAGTTGAACCACTAGCTTCAAGCACTTGGGATCAGGTACCACCCTCTAAAACATTGATCACACCTGTCCAATGCAAATCCTTGTGGAGGCAATTCAAGATGGAGACAGAATATAGTGTCTCTCAGGCCATTTCTGCACAGGAAGCCAACAATCGTAGCAGGCACTGGTTACCTCCACCATGGGCGATTGTGGCTTTGCTTATTCTTGGATTTAATGAATTTATGACACTTTTAAGAAATCCCTTGTATTTAGGTGTCATCTTCGTTGGCTATCTTCTCATTAAAGCCCTATGGGCGCAGCTTGACATTACGGGTGAATTTCGCCATGGAGCTCTTCCCGGAATCATCTCCTTGTCTAGCAAGTTTGTTCCAACTATCATGAACCTTATCAGAAAACTAGCAGAGGAGGGACATGGGCGCCATGCAGCTAAGGTTCCCGCTGGTAGAGTTACGTCATCTAGTGCTTCATCTAGTGTAACTTCATCGGGCAATGGAGCCGAGTATACGAGTTCATCAAAATATGAGTAG 2439 0.4145 MQMANNEKCCSTQLIDGDGAFNVGGIENFMKEVKLSECGLSYAVVSIMGPQSSGMLRDLNFVSYSFHEQICCVIASPSQFALEDVSQTTRGIWMARCVGIEPCTLVMDLEGTDGRERGEDDTTFEKQSALFALAISDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTMLFVIRDKTKTPLENLEPVLREDIQKIWDSVPKPDAHKETPLSEFFIVEVVALSSFEEKEEQFKEQVANLRQRFYHSIAPGGLAGDRRGVVPASGFSFSAQEIWKIIKENKDLDLPAHKVMVATVRCEEIANEKYDLFATNKDWCELEEAVQSGPISGFGKKLNSLITTCLSEYDAEANYFDEGVRSAKQKQLQEKLFQLVQPTFQIALGHIRSGILDKFKEAFDKALNGGEGFSSAANKCIEFYMAQFDEGCADVVIEIANWDTSKGREKLQREIDAHVASVRASKMSELVSSYEEKLKEALSAPVETLLDGANSDTWPSIRKLLNRETQSAVSGFSVELIRFDVDEQQKKSMIVSLEDYAKGVIEAKAREEAGRVLISMKDSRFMTLFSHDSDSMPRIWTGKEDVRAITKSARSSCLKLLSVMAVIRLDDGDDIYDIEKTLIVALADSSSSYAKDKSTMTVEPLASSTWDQVPPSKTLITPVQCKSLWRQFKMETEYSVSQAISAQEANNRSRHWLPPPWAIVALLILGFNEFMTLLRNPLYLGVIFVGYLLIKALWAQLDITGEFRHGALPGIISLSSKFVPTIMNLIRKLAEEGHGRHAAKVPAGRVTSSSASSSVTSSGNGAEYTSSSKYE 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03140 812 MobiDBLite consensus disorder prediction 780 812 - -
Gma13g03140 812 CDD GBP 38 253 - -
Gma13g03140 812 PANTHER PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG 6 810 - -
Gma13g03140 812 MobiDBLite consensus disorder prediction 786 812 - -
Gma13g03140 812 PANTHER PROTEIN SEY1 6 810 IPR008803 -
Gma13g03140 812 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 39 263 IPR030386 GO:0005525
Gma13g03140 812 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 83 292 - -
Gma13g03140 812 Pfam Sey1 three-helix bundle domain 334 773 IPR046758 -
Gma13g03140 812 Coils Coil 229 249 - -
Gma13g03140 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 259 IPR027417 -
Gma13g03140 812 Hamap Protein SEY1 [SEY1]. 11 775 IPR008803 -
Gma13g03140 812 Gene3D - 26 264 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03140 Gma-Chr13 45547513 45555688 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03140 K22698 - gmx:100797516 1412.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03140 13 45547513 45555688 Gma15g00226 15 1974396 1981455 GST
Gma13g03140 13 45547513 45555688 Gma07g00094 07 766749 777247 PCT
Gma13g03140 13 45547513 45555688 Gma08g01783 08 15869709 15877946 PCT
Gma07g00094 07 766749 777247 Gma13g03140 13 45547513 45555688 PCT
Gma08g01783 08 15869709 15877946 Gma13g03140 13 45547513 45555688 PCT