Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g03069 ATGTTGGTGGTTTCTTTGGGGCGAATCAATGTCTCCTCGGTGTGTGCCAAAACAAGAAAATGCTTTTCCTCAAAATCTCATCTCCATACTTTCACTCCTGCTTCAGTCTCCCATCAGAAATTTCCAGAAGATCCGATGATTTGCACAAATGAATTGCCTCAAATTAGTAGTGAGGCCCCTGCACATTGGAAAATGGTTCTTCAAGGGATTCGCCAAATGCGGAGTTCTGCAGATGAACACCAACCGGTTTCACGTGAGAAAGCTGCTGATACTGTACCCCCTAAGGAAAGAAGATTTGCTGTCCTGACATCTTCCCTTTTATCAAGCCAAACTAAGGAGCATGTTACTCGTGgagcgacacaacgtcttggtgaaaatgatctgcttactgctgatgcaatggacaaagctgatgaagaaaccatcaaaaagttaatttaccctGTtggattttataaaagaaaagctagtaacttgaagaaaattgccaatatttgtctcttgaagtatgatggagacataccaagctcaattgaggaactactcttgctgccaggagtaggtcctaagattgctcatctgGTTATGATTGTTGGATggaacaatgtccaagggatatgtgtagatactcatgtccaccgcatttgcaatcgtcttggatgggtttcGAGACCAGGCTCAAAACAGAAAACTTTGACACCGGAAGAAACAAGACAAGCGCTGCAACGGTGGCTTCCGAAGGAAGAATGGGTTCCAATAAATACTCTTTTGGTAGGATTTGGACGAGCAATCTGTACTCCTCTACGGCCTCACTGTGGAGATTGTAGTGTAAATAGGTTCTGCCCATCAGCATTCAAGGAGACTTAA 867 0.2918 MLVVSLGRINVSSVCAKTRKCFSSKSHLHTFTPASVSHQKFPEDPMICTNELPQISSEAPAHWKMVLQGIRQMRSSADEHQPVSREKAADTVPPKERRFAVLTSSLLSSQTKEHVTRGATQRLGENDLLTADAMDKADEETIKKLIYPVGFYKRKASNLKKIANICLLKYDGDIPSSIEELLLLPGVGPKIAHLVMIVGWNNVQGICVDTHVHRICNRLGWVSRPGSKQKTLTPEETRQALQRWLPKEEWVPINTLLVGFGRAICTPLRPHCGDCSVNRFCPSAFKET 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g03069 288 CDD ENDO3c 99 261 IPR003265 GO:0006284
Gma13g03069 288 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 57 288 - -
Gma13g03069 288 Gene3D - 199 286 IPR023170 -
Gma13g03069 288 SUPERFAMILY DNA-glycosylase 92 287 IPR011257 GO:0003824|GO:0006281
Gma13g03069 288 MobiDBLite consensus disorder prediction 78 94 - -
Gma13g03069 288 Hamap Endonuclease III-like protein 1 [NTHL1]. 59 287 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Gma13g03069 288 Gene3D Hypothetical protein; domain 2 85 198 - -
Gma13g03069 288 SMART ccc3 264 284 IPR003651 GO:0051539
Gma13g03069 288 Pfam Helix-hairpin-helix motif 169 196 IPR000445 GO:0003677
Gma13g03069 288 Pfam HhH-GPD superfamily base excision DNA repair protein 104 245 IPR003265 GO:0006284
Gma13g03069 288 MobiDBLite consensus disorder prediction 75 94 - -
Gma13g03069 288 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 57 288 - -
Gma13g03069 288 ProSitePatterns Endonuclease III family signature. 172 201 IPR004036 -
Gma13g03069 288 SMART endo3end 107 263 IPR003265 GO:0006284
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g03069 Gma-Chr13 45044764 45049512 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g03069 K10773 - gmx:100805799 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g03069 13 45044764 45049512 Gma13g03069 13 45044764 45049512 ECH
Gma13g03069 13 45044764 45049512 Gma15g00292 15 2527365 2529348 GST
Gma13g03069 13 45044764 45049512 Gma12g00476 12 3887854 3889082 PCT
Gma13g03069 13 45044764 45049512 Gma11g01174 11 9901999 9906856 PCT
Gma12g00476 12 3887854 3889082 Gma13g03069 13 45044764 45049512 PCT
Gma11g01174 11 9901999 9906856 Gma13g03069 13 45044764 45049512 PCT