Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01174 ATGAATATGATGTCTGAGACAACTCGAAGCTTTTGCAAAGCCACCAGTCCCTCCAATACCACTTCCATTATTGAAGCTACCCATTCCCAAGTTCGTGTCTTTATGAGGAGAAATAAGAGACCCAGAAATATGGCCCTCAAACTTGAACAAAGCGATCATCAGGATCTCAAGgttccggttacacacaagtttggcctaccagagattgaagaatttgcgtattgtggagcaaaggaattgactcagtgtgGGAAGTCTGAAATGGGATCAGATGCGATTCCAGTGGCAAGTGAAGTTGCTTCAACAAGATCTAGTGGTGAGTCACCTGCCCAATGGGAAAAGGTGCTTGAGGGGATTCGCAAAATGAGGTGTTCTGCAGATGCACCAGTAGATACTATGGGATGCGAGAAAGCTGGGGAAACACTACCTCCTAAGGAACGAAGATTTGCTGTCCTGGTATCTTCTCTTTTATCAAGCCAAACAAAGGATCCTGTTACTCATGgagcaatccaacgtcttcttcaaaatgatctgcttactgctgatgcaatcaatgatgctgatgaagaaaccatcaaaaagctgatttatcctgttgggttttatactagaaaagcctctaacttgaaaaaaattgcaaatatctgtctcatgaagtatgatggagacatacctagctcaattgagcaactactgttacttcctggcatcggtcctaagatggctcatttggttatgaatgttggatggaacaatgttcaaggaatatgtgtagatactcatgtccaccgcatttgcaaccgccttgggtgggTCTCAAGACTGGGCACAAAACAGAAAACTTCGACACCCGAAGAGACGAGGGAGGAATTGCAACGGTGGCTTCCAAAGGAAGAATGGGTTCCAATAAATCCTCTATTGGTAGGATTTGGACAAACAATTTGTACACCTCTAAGACCTCGTTGTGGAGAATGCAGCATAAGTGAGTTATGCCCCTCAGCCTTCAAGGAGACCTCAAACTCAAGCCCATCTTCTTCCAAGTCCAAAAAGTCTGGACTAAACAAGAGGGTTTGA 1074 0.2868 MNMMSETTRSFCKATSPSNTTSIIEATHSQVRVFMRRNKRPRNMALKLEQSDHQDLKVPVTHKFGLPEIEEFAYCGAKELTQCGKSEMGSDAIPVASEVASTRSSGESPAQWEKVLEGIRKMRCSADAPVDTMGCEKAGETLPPKERRFAVLVSSLLSSQTKDPVTHGAIQRLLQNDLLTADAINDADEETIKKLIYPVGFYTRKASNLKKIANICLMKYDGDIPSSIEQLLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSRLGTKQKTSTPEETREELQRWLPKEEWVPINPLLVGFGQTICTPLRPRCGECSISELCPSAFKETSNSSPSSSKSKKSGLNKRV 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01174 357 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 315 331 IPR004035 -
Gma11g01174 357 MobiDBLite consensus disorder prediction 335 357 - -
Gma11g01174 357 MobiDBLite consensus disorder prediction 335 350 - -
Gma11g01174 357 Pfam Helix-hairpin-helix motif 219 247 IPR000445 GO:0003677
Gma11g01174 357 ProSitePatterns Endonuclease III family signature. 222 251 IPR004036 -
Gma11g01174 357 Gene3D Hypothetical protein; domain 2 135 246 - -
Gma11g01174 357 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 65 351 - -
Gma11g01174 357 SMART ccc3 314 334 IPR003651 GO:0051539
Gma11g01174 357 Hamap Endonuclease III-like protein 1 [NTHL1]. 108 337 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Gma11g01174 357 Gene3D - 247 337 IPR023170 -
Gma11g01174 357 Pfam HhH-GPD superfamily base excision DNA repair protein 153 296 IPR003265 GO:0006284
Gma11g01174 357 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 65 351 - -
Gma11g01174 357 SMART endo3end 157 313 IPR003265 GO:0006284
Gma11g01174 357 SUPERFAMILY DNA-glycosylase 119 341 IPR011257 GO:0003824|GO:0006281
Gma11g01174 357 CDD ENDO3c 149 311 IPR003265 GO:0006284
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01174 Gma-Chr11 9901999 9906856 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01174 K10773 - gmx:100818398 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01174 11 9901999 9906856 Gma11g01174 11 9901999 9906856 ECH
Gma12g00476 12 3887854 3889082 Gma11g01174 11 9901999 9906856 GST
Gma13g03069 13 45044764 45049512 Gma11g01174 11 9901999 9906856 PCT
Gma15g00292 15 2527365 2529348 Gma11g01174 11 9901999 9906856 PCT
Gma11g01174 11 9901999 9906856 Gma13g03069 13 45044764 45049512 PCT
Gma11g01174 11 9901999 9906856 Gma15g00292 15 2527365 2529348 PCT