Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01295 ATGGAATCGTTCCAAGGTGACAGGGATGACATTTCCTACCAAATGGGTTTGATTTGGAGCCAAGTGAAGGAGCCAGTGATCGTGCCAATGCTGAGAGTTGCAGTGTTTCTGTGCTTGGCCATGTCGTTGATGATGCTGGTCGAGAGGGTGTACATGGGCATTGTCATTTGCTTGGTGAAGCTGTTTAGTCGAAGACCCGAGAAGCGTTACAAGTGGGAGCCTATGAAGGACGATGTTGAGTTGGGAAACTCTAGCTATCCCATGGTTTTGGTCCAAGTCCCAATGTACAACGAAAGAGAGGTTTATCAGCTATCAATCGGTGCTGCTTGTGGCCTTTCTTGGCCTTCAGACAGAATCATCATACAAGTTCTTGATGATTCTACTAACCCAACAATCAAGGAGCTGGTGCAAATGGAATGTAGTAGATGGGCGAGCAAAGGGGTGAACATAAAGTACGAGGTGAGGGACAACAGAGACGGGTACAAAGCAGGGGCTCTGAAAGAAGGCATGAAACGCAGCTACGTGAAGCAATGTGACTATGTTGCCATCTTTGACGCCGATTTTCAACCGGAGCCTGATTTCCTCTGGCGAACTGTCCCATTCCTTGTCAACAACCCTGAACTTGGTCTCGTTCAGGCACGCTGGAAGTTTGTGAATGCCAATGAATGTTTGATGACCAGGATGCAAGAGATGTCACTGGATTACCATTTCACTGTGGAACAAGAAGTGGGGTCTTGCACTTACGCCTTCTTTGGCTTCAACGGAACTGCTGGTGTATGGAGAATTTCGGCGTTGTATGAGTCTGGAGGGTGGAATCATAGGACCACAGTGGAAGATATGGACCTGGCTGTCCGAGCCAGTCTCAGAGGATGGAAATTCTTGTACCTACCCAATTTGAAGGTTAAAAACGAATTGCCAAGTACTTTGAACGCCTACCGCTTCCAACAGCACAGGTGGTCTTGTGGACCAGCCAATCTTTTCATGAAAATGTTCATGGAGATTATGAGAAACAGGAAGGTGTCCTTGTATAAGAAGATATATGTGATTTACAGCTTCTTCTTTGTCCGGAAGGTCGTGGCCCACCTCAACACTTTTATGTTCTATTGTATTGTGTTACCTGCTACTGTTGTGGTGCCTGAGGTGGTGGTCCCCAAGTGGGGTGCTGTGTACATCCCTTCCATCATCACACTCCTAAATGCTGTTGGAACTCCAAGGTCACTCCACTTGCTGGTCTTCTGGATTCTCTTTGAGAATACCATGTCTCTGCATCGAACAAAGGCAACGATTATTGGTCTACTAGAGGGTAGTCGAGCGAATGAATGGATTGTCACTCAAAAGGGTAAACCACCCAAGAGTCGGTTTAGGATAAGGATTCATCACATGTTGGAACTTCTTGTTGGATTCTACCTCTTCTTCTGTGGCTGCTATGATATTATGTTCGGGAAAAACCGCTACTACATATTCCTATACATCCAATCAATTGCTTTCTTCATCATGGCCTTTGGATATGTTGGTATTTTCGATCCCAACACCTAG 1536 0.4603 MESFQGDRDDISYQMGLIWSQVKEPVIVPMLRVAVFLCLAMSLMMLVERVYMGIVICLVKLFSRRPEKRYKWEPMKDDVELGNSSYPMVLVQVPMYNEREVYQLSIGAACGLSWPSDRIIIQVLDDSTNPTIKELVQMECSRWASKGVNIKYEVRDNRDGYKAGALKEGMKRSYVKQCDYVAIFDADFQPEPDFLWRTVPFLVNNPELGLVQARWKFVNANECLMTRMQEMSLDYHFTVEQEVGSCTYAFFGFNGTAGVWRISALYESGGWNHRTTVEDMDLAVRASLRGWKFLYLPNLKVKNELPSTLNAYRFQQHRWSCGPANLFMKMFMEIMRNRKVSLYKKIYVIYSFFFVRKVVAHLNTFMFYCIVLPATVVVPEVVVPKWGAVYIPSIITLLNAVGTPRSLHLLVFWILFENTMSLHRTKATIIGLLEGSRANEWIVTQKGKPPKSRFRIRIHHMLELLVGFYLFFCGCYDIMFGKNRYYIFLYIQSIAFFIMAFGYVGIFDPNT 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01295 511 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 78 303 IPR029044 -
Gma13g01295 511 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN A1 1 510 - -
Gma13g01295 511 SUPERFAMILY Nucleotide-diphospho-sugar transferases 84 365 IPR029044 -
Gma13g01295 511 PANTHER - 1 510 - -
Gma13g01295 511 Pfam Glycosyltransferase like family 2 88 322 - -
Gma13g01295 511 CDD CESA_CaSu_A2 87 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01295 Gma-Chr13 27370402 27377419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g01295 2 510 Miscellaneous Gene Families AT5G03760 75.048 0.0 840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01295 K13680 - gmx:100808118 1046.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g01295 13 27370402 27377419 Gma03g01750 03 43582326 43586875 ECH
Gma13g01295 13 27370402 27377419 Gma13g01295 13 27370402 27377419 ECH
Gma10g00603 10 6372156 6379206 Gma13g01295 13 27370402 27377419 GST
Gma19g01801 19 47232216 47237693 Gma13g01295 13 27370402 27377419 PCT
Gma03g01750 03 43582326 43586875 Gma13g01295 13 27370402 27377419 PCT
Gma13g01295 13 27370402 27377419 Gma19g01801 19 47232216 47237693 PCT
Gma13g01295 13 27370402 27377419 Gma03g01750 03 43582326 43586875 PCT