Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g01272 ATGTCCACTAAATTTCGGGGATCACAAGAACACCATCATGGTTCTTCTTCTTCCAGCACCAGCACTTCACACGTTCCCCCTGGCCAAGCTGCTGGACTTGTTGCTATTTTGAAGGATAAAAGTGTTGATGAGTTGCGGAAGCTCTTATCTAACAAAGATGCGTATCAGCAATTTTTAAGTTCGCTTGATGAGGTCAAGATTCAAAATGATGTGAATGATGATCTTTGCAAGGAGAATCTGCAGCTTGCCGATGAAAATCTACAAAAGGAACCTCGTATTGTGGAACTTAGGAACCAGAATAAAATAATTTGTACAACTGAGCTGGCTATGGCTCAAGAGAAACTGAATGGGCTTGAGAAGCAGAAAGAGGAAATGATGAAGTTGAATTCCCCACTATACCTTCTCCAATGGATTCAAGAGGCTATGAATAAGACAGAAGCGGAATCTGAAAATCTGCATCAGCAAGTCCTTGACAGAGAGATTGACATTGGAGCTTTTCTGCAGAAATACAAAAAGCTGCGTACTGCTTACCACAGGAAAAGTCTCGTACATCTTGCAGCTAGAACATCAAATATATAG 579 0.4111 MSTKFRGSQEHHHGSSSSSTSTSHVPPGQAAGLVAILKDKSVDELRKLLSNKDAYQQFLSSLDEVKIQNDVNDDLCKENLQLADENLQKEPRIVELRNQNKIICTTELAMAQEKLNGLEKQKEEMMKLNSPLYLLQWIQEAMNKTEAESENLHQQVLDREIDIGAFLQKYKKLRTAYHRKSLVHLAARTSNI 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g01272 192 MobiDBLite consensus disorder prediction 12 27 - -
Gma13g01272 192 Coils Coil 108 128 - -
Gma13g01272 192 Pfam Modifier of rudimentary (Mod(r)) protein 38 181 IPR009851 -
Gma13g01272 192 SUPERFAMILY Endosomal sorting complex assembly domain 133 180 IPR037202 -
Gma13g01272 192 MobiDBLite consensus disorder prediction 1 27 - -
Gma13g01272 192 PANTHER WILLIAMS-BEUREN SYNDROME CRITICAL REGION PROTEIN-RELATED 14 192 - -
Gma13g01272 192 PANTHER VACUOLAR PROTEIN-SORTING-ASSOCIATED PROTEIN 37 HOMOLOG 2 14 192 - -
Gma13g01272 192 Coils Coil 135 155 - -
Gma13g01272 192 Gene3D Helix hairpin bin 111 185 IPR029012 -
Gma13g01272 192 ProSiteProfiles VPS37 C-terminal domain profile. 112 192 IPR009851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g01272 Gma-Chr13 27080197 27083278 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g01272 K12185 - gmx:100818793 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g01272 13 27080197 27083278 Gma13g01272 13 27080197 27083278 ECH
Gma10g00579 10 6084569 6087343 Gma13g01272 13 27080197 27083278 GST
Gma19g01779 19 47066217 47071012 Gma13g01272 13 27080197 27083278 PCT
Gma03g01729 03 43409861 43418170 Gma13g01272 13 27080197 27083278 PCT
Gma13g01272 13 27080197 27083278 Gma19g01779 19 47066217 47071012 PCT
Gma13g01272 13 27080197 27083278 Gma03g01729 03 43409861 43418170 PCT