Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01803 ATGGATCGCCGCATCTACGGCGTCTCCGGCCACCGCATCTTCCTCTCCCTTCTCTTCCTTGTCTCTGTTTTCCCACAAGCGTTAACGCTGTCGCCGTCACCGACGGCTCAGATTAACTCAAACTCAATCCTCGTCGCTCTTCTGGACTCGCATTACACGGAACTCGCGGAGCTTGTCGAAAAAGCCATGTTGTTACAGAAACTAGAAGACACTGTCGCCACTCACAACATAACAATCTTCGCTCCGACCAACGAAGCCTTAGACCGCAACCTCGACCCCGATTTCAAGCGCTTTCTTCTCGAACCCGCCAATCTTCACTCCCTCCAGACGCTCCTCCTCTCTCACATCACCCCCGCGCAAATAGGATCCAAAACCCTAACCCGCCACGTCACCTCTCTTTCCGACCACAACCTCAAGCTCTCCGAAAATCTCACCACCGTCGACGAAGCCAAGGTTACCCACCCGGATGTGGTGACCCGACCCGACGGCGTCATCCACGGCATCGACCGCCTCCTCCTCCCCCGCTCCGTCGAGGACGACTTCAACCGCCGCCGCAGCCTCCGCTCCATCACCGCCGTCAAACCCGAACCCTCGCCGGAAATCGACCCGAGAACCCACCGTCTAAAGAAACCTCCCCCGCCGGTGAAACCCGGTTCCTCCCCGGAACTTCCGATTTACGACGCGATGGCTCCGGGACCCGCCCTGGCCCCGGCGCCGGCGCCGGGGCCAGGCGGCCCGCACCACCACTTCAACGGAGAAAGACAAGTCGAGGACTTCATCCACACGCTCCTCCACTACGGCGGGTACAACGAGATGGCGGACATTCTCGTAAACCTAACGTCGTTGGCCGTTGAAATGGGTCGTTTAGTTTCGGAGGGTTACGTGCTCACCGTTTTGGCCCCAAACGACGAAGCGATGGCGAAGTTGACAACGGAGCAATTAAGCGAACCGGGGGCGCCGGAGCAGATAATGTACTATCACATAATACCGGAGTACCAGACCGAAGAGAGCATGTACAATGCGGTTAGAAGGTTCGGGAAGGTTCGCTACGATACCCTACGGTTGCCGCATAAGGTGGTGGCGCAAGAAGCTGATGGGTCCGTTAAATTCGGGCACGGGGACGGGTCGGCTTATTTGTTCGACCCGGATATTTACACCGATGGACGGATCTCGGTTCAGGGGATTGATGGGGTTTTGTTTCCGACGGTGGAGGTGGAGGGGGCGGAGCGGGTTAGACCGGTTACCCGGACCGGTCAGAACGGTGCGAAAGTTGTTGTCAAGCACAGGAGAGGAAAATTACTGGAAACAGCATGCTGGATGCTTGGAACTTTTGGACAGCATTCTAGATTCGCCTCTTGTCAATGA 1365 0.5722 MDRRIYGVSGHRIFLSLLFLVSVFPQALTLSPSPTAQINSNSILVALLDSHYTELAELVEKAMLLQKLEDTVATHNITIFAPTNEALDRNLDPDFKRFLLEPANLHSLQTLLLSHITPAQIGSKTLTRHVTSLSDHNLKLSENLTTVDEAKVTHPDVVTRPDGVIHGIDRLLLPRSVEDDFNRRRSLRSITAVKPEPSPEIDPRTHRLKKPPPPVKPGSSPELPIYDAMAPGPALAPAPAPGPGGPHHHFNGERQVEDFIHTLLHYGGYNEMADILVNLTSLAVEMGRLVSEGYVLTVLAPNDEAMAKLTTEQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPTVEVEGAERVRPVTRTGQNGAKVVVKHRRGKLLETACWMLGTFGQHSRFASCQ 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01803 454 ProSiteProfiles FAS1/BIgH3 domain profile. 39 172 IPR000782 -
Gma12g01803 454 Gene3D FAS1 domain 279 401 IPR036378 -
Gma12g01803 454 ProSiteProfiles FAS1/BIgH3 domain profile. 256 384 IPR000782 -
Gma12g01803 454 Gene3D FAS1 domain 26 175 IPR036378 -
Gma12g01803 454 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 1 454 - -
Gma12g01803 454 SUPERFAMILY FAS1 domain 235 401 IPR036378 -
Gma12g01803 454 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 1 454 IPR044654 -
Gma12g01803 454 MobiDBLite consensus disorder prediction 188 252 - -
Gma12g01803 454 SUPERFAMILY FAS1 domain 39 175 IPR036378 -
Gma12g01803 454 Pfam Fasciclin domain 295 401 IPR000782 -
Gma12g01803 454 Pfam Fasciclin domain 51 174 IPR000782 -
Gma12g01803 454 SMART fasc_3 78 175 IPR000782 -
Gma12g01803 454 SMART fasc_3 297 402 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01803 Gma-Chr12 38646616 38649648 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01803 - - gmx:100782264 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02754 13 42126070 42128841 Gma12g01803 12 38646616 38649648 GST
Gma12g01803 12 38646616 38649648 Gma12g00856 12 8253570 8257686 PCT
Gma12g01803 12 38646616 38649648 Gma06g02739 06 51177072 51182229 PCT
Gma12g00856 12 8253570 8257686 Gma12g01803 12 38646616 38649648 PCT
Gma06g02739 06 51177072 51182229 Gma12g01803 12 38646616 38649648 PCT