Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00856 ATGTATTTTCGCATCTATGGCGTCACGATCCTCCTCTTCCTCCTCCCAACCCTCACATTCTCCCTCTCGCAGGGTCAGATAAACTCAAACTCAATCCTCGTCGCTCTGCTGGACTCGCATTACACCGAAGTAGCTGAGCTTGTGGAAAAAGCCATGCTTTTGCAGACGCTGGAGAACACCGTGATGAACAACAACATCACCATCTTCGCTCCCAGAAATGAAGCCCTCGAACGCGATCTCGACCCTGATTTCAAGCGCTTCCTCCTCGAACCCCGCAATCTCCAATCCCTCCAAACTCTCCTTTTGTCCCACATCGTCCCCAAAAGAATCATCAAACCCGAATACCTAACCGGGACGGGCAATCCGGGTAGGTCAAATAACCCGACCCGGCACCGAACGCTAGCTCCGAACCACCACCTCACTCTCCAGTCCCTGAATTTGACTCACTGGAATGTCGATTCTTCCCGGGTCATGAACCCGGATTCAGTGACCCGACCCGACGGAGTGATCCACGGCATCGACACTTTACTAATCCCTCGCTCCGTCCAAGACGAATTCAACCGTCGCCGGAATCTGATCTCCATCGCGGCCGTGAAACCCGAACCCTCCCCGGAGGTCGACCCGCGAACCCACAGGTTAAAAAAACCAGCGCCGGCATCGCCGGCGGGTTCTCCGCCGGCGCTCCCGATCTACGACGCGATGGCGCCGGGGCCCTCGCTAGCTCCGGCGCCAGCGCCGGGGCCTGGGGGGCCCCGCCACCACTTCAATGGGGAGAAGCAAGTAAAAGACTTCATCCACACGCTTCTCCATTACGGCGGTTACAACGAGATGGCGGATATTCTGGTAAACTTAACGTCACTGGCGACGGAGATGGGACGGTTGGTGTCGGAGGGTTACGTGTTGACGGTGTTGGCTCCAAACGACGAGGCCATGGCGAAGTTAACCACGGACCAGTTAAGTGAACCGGGTTCGCCCGAACAGATTATGTATTATCATTTGATTCCTGAGTATCAGACCGAGGAGAGCATGTACAATGCCGTTAGAAGGTTCGGGAAGGTCCGTTACGACACCTTACGGTTGCCGCACAAGGTGACGGCGCAGGAGGCTGACGGCTCCGTTAAGTTCGGGCACGGGGACACTTCCGCGTACTTGTTCGACCCCGATATTTACACGGATGGACGGATCTCCGTTCAGGGAATTGACGGCGTTCTCTTTCCGCCTCAGGAGGAAGATGCTGGGCCCGTTACCCGATCCAAGCCCGcTAAGGTCGTCGTTAAGCAAAGAAGAGGTAAATTGTTGGAAACAGCATGTTGGATGCTTGGAAGCTTTGGACAGAACTCTAGATTCATCTCTTGTCAATAA 1362 0.5521 MYFRIYGVTILLFLLPTLTFSLSQGQINSNSILVALLDSHYTEVAELVEKAMLLQTLENTVMNNNITIFAPRNEALERDLDPDFKRFLLEPRNLQSLQTLLLSHIVPKRIIKPEYLTGTGNPGRSNNPTRHRTLAPNHHLTLQSLNLTHWNVDSSRVMNPDSVTRPDGVIHGIDTLLIPRSVQDEFNRRRNLISIAAVKPEPSPEVDPRTHRLKKPAPASPAGSPPALPIYDAMAPGPSLAPAPAPGPGGPRHHFNGEKQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGSPEQIMYYHLIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVTAQEADGSVKFGHGDTSAYLFDPDIYTDGRISVQGIDGVLFPPQEEDAGPVTRSKPAKVVVKQRRGKLLETACWMLGSFGQNSRFISCQ 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00856 453 MobiDBLite consensus disorder prediction 200 255 - -
Gma12g00856 453 Pfam Fasciclin domain 286 406 IPR000782 -
Gma12g00856 453 Pfam Fasciclin domain 40 179 IPR000782 -
Gma12g00856 453 ProSiteProfiles FAS1/BIgH3 domain profile. 28 177 IPR000782 -
Gma12g00856 453 SUPERFAMILY FAS1 domain 31 180 IPR036378 -
Gma12g00856 453 Gene3D FAS1 domain 280 407 IPR036378 -
Gma12g00856 453 SMART fasc_3 302 407 IPR000782 -
Gma12g00856 453 SMART fasc_3 67 180 IPR000782 -
Gma12g00856 453 Gene3D FAS1 domain 35 182 IPR036378 -
Gma12g00856 453 ProSiteProfiles FAS1/BIgH3 domain profile. 261 404 IPR000782 -
Gma12g00856 453 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 1 453 IPR044654 -
Gma12g00856 453 SUPERFAMILY FAS1 domain 240 407 IPR036378 -
Gma12g00856 453 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 1 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00856 Gma-Chr12 8253570 8257686 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00856 - - gmx:100790599 868.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00856 12 8253570 8257686 Gma06g02739 06 51177072 51182229 GST
Gma13g02754 13 42126070 42128841 Gma12g00856 12 8253570 8257686 PCT
Gma12g01803 12 38646616 38649648 Gma12g00856 12 8253570 8257686 PCT
Gma12g00856 12 8253570 8257686 Gma13g02754 13 42126070 42128841 PCT
Gma12g00856 12 8253570 8257686 Gma12g01803 12 38646616 38649648 PCT