Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00308 ATGAGTGCGTCCAGGTTCATCAAGTGTGTCACTGTGGGTGACGGTGCCGTTGGCAAGACTTGCATGCTCATCTCCTACACCAGCAACACTTTTCCTACGGACTACGTGCCAACTGTCTTTGACAATTTCAGTGCAAATGTAGTTGTGGATGGAAGCACTGTGAATCTTGGGTTGTGGGATACTGCTGGCCAAGAAGATTACAATAGATTAAGACCCTTAAGCTATCGTGGAGCAGATGTATTCCTGCTTGCTTTCTCTCTCATAAGCAGGGCTAGCTATGAAAATGTTGCCAAGAAATGGATTCCTGAGTTGAGGCATTATGCTCCTGGTGTTCCAATTATTCTTGTTGGAACAAAACTTGATCTTCGGGATGATAAGCAGTTCTTTCAAGACCATCCTGGTGCAGTGCCTATCACCACAGCACAGGGTGAGGAGCTGAGAAAGCTTATCGGTGCTCCAGTTTACATTGAATGTAGTTCAAAAACGCAACAGAATGTGAAGGCTGTTTTTGATGCGGCCATCAAGGTAGTTCTCCAGCCCCCAAAACAGAAGAAAAAGAAGAGAAAGGGGCAAAAGGCCTGTTCCATTTTGTGA 594 0.4545 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISRASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFQDHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKRKGQKACSIL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00308 197 CDD Rop_like 6 178 - -
Gma12g00308 197 SMART ras_sub_4 4 180 - -
Gma12g00308 197 TIGRFAM small_GTP: small GTP-binding protein domain 7 171 IPR005225 GO:0005525
Gma12g00308 197 PRINTS Transforming protein P21 ras signature 7 28 - -
Gma12g00308 197 PRINTS Transforming protein P21 ras signature 30 46 - -
Gma12g00308 197 PRINTS Transforming protein P21 ras signature 47 69 - -
Gma12g00308 197 PRINTS Transforming protein P21 ras signature 109 122 - -
Gma12g00308 197 PRINTS Transforming protein P21 ras signature 155 177 - -
Gma12g00308 197 ProSiteProfiles small GTPase Rho family profile. 1 177 - -
Gma12g00308 197 SMART rab_sub_5 7 180 - -
Gma12g00308 197 ProSiteProfiles small GTPase Rab1 family profile. 2 197 - -
Gma12g00308 197 Pfam Ras family 8 178 IPR001806 GO:0003924|GO:0005525
Gma12g00308 197 PANTHER RAC-LIKE GTP-BINDING PROTEIN 5 1 197 - -
Gma12g00308 197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 178 IPR027417 -
Gma12g00308 197 SMART rho_sub_3 9 180 IPR001806 GO:0003924|GO:0005525
Gma12g00308 197 PANTHER RHO FAMILY GTPASE 1 197 IPR003578 GO:0005525|GO:0007264
Gma12g00308 197 ProSiteProfiles small GTPase Ras family profile. 2 197 IPR001806 GO:0003924|GO:0005525
Gma12g00308 197 Gene3D - 5 192 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00308 Gma-Chr12 2504371 2507814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00308 7 180 EF-hand Containing Proteins AT5G27540 27.011 1.87e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00308 K04392 - gmx:100785464 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00308 12 2504371 2507814 Gma12g00308 12 2504371 2507814 ECH
Gma04g00220 04 1865756 1873661 Gma12g00308 12 2504371 2507814 ECH
Gma06g00201 06 1768024 1773083 Gma12g00308 12 2504371 2507814 ECH
Gma16g01169 16 28936511 28942562 Gma12g00308 12 2504371 2507814 ECH
Gma12g00308 12 2504371 2507814 Gma11g00718 11 6038015 6040490 ECH
Gma12g00308 12 2504371 2507814 Gma01g01679 01 52463551 52466087 ECH
Gma12g00308 12 2504371 2507814 Gma02g00419 02 4284774 4287732 ECH
Gma12g00308 12 2504371 2507814 Gma16g01169 16 28936511 28942562 ECH
Gma12g00308 12 2504371 2507814 Gma11g00981 11 8348605 8351578 GST