Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00220 ATGAGTGCGTCGAGGTTCATTAAGTGCGTCACCGTCGGCGACGGCGCTGTCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTtttcccacgGACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGATGGAAGCACCGTAAACCTAGGATTGTGGGATACAGCTGGTCAGGAGGATTACAATAGATTAAGACCCTTGAGCTATCGAGGAGCTGATGTCTTCATACTTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAGTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTGGAACAAAGTTAGATCTTCGGGATGATAAGCAATTTTTTATGGACCATCCTGGTGCAGTGCCAATTACTACAGCACAGGGAGAAGAATTGAGAAAGCTGATTGGTGCTCCGGCCTACATTGAGTGTAGTTCCAAAACGCAACAGAACGTGAAAGCTGTCTTTGACGCGGCAATCAAAGTGGTTATCCAACCACCAAAGCTAAAGAAAAAGAGAAAAACACAGAAAGCTTGCTCCATATTATGA 591 0.4416 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFMDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVIQPPKLKKKRKTQKACSIL 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00220 196 Gene3D - 5 194 IPR027417 -
Gma04g00220 196 ProSiteProfiles small GTPase Rab1 family profile. 2 196 - -
Gma04g00220 196 SMART rho_sub_3 9 180 IPR001806 GO:0003924|GO:0005525
Gma04g00220 196 CDD Rop_like 6 178 - -
Gma04g00220 196 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 177 IPR027417 -
Gma04g00220 196 PRINTS Transforming protein P21 ras signature 7 28 - -
Gma04g00220 196 PRINTS Transforming protein P21 ras signature 30 46 - -
Gma04g00220 196 PRINTS Transforming protein P21 ras signature 47 69 - -
Gma04g00220 196 PRINTS Transforming protein P21 ras signature 109 122 - -
Gma04g00220 196 PRINTS Transforming protein P21 ras signature 155 177 - -
Gma04g00220 196 SMART ras_sub_4 4 180 - -
Gma04g00220 196 ProSiteProfiles small GTPase Ras family profile. 2 196 IPR001806 GO:0003924|GO:0005525
Gma04g00220 196 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 1 196 - -
Gma04g00220 196 PANTHER RHO FAMILY GTPASE 1 196 IPR003578 GO:0005525|GO:0007264
Gma04g00220 196 Pfam Ras family 8 177 IPR001806 GO:0003924|GO:0005525
Gma04g00220 196 SMART rab_sub_5 7 180 - -
Gma04g00220 196 ProSiteProfiles small GTPase Rho family profile. 1 177 - -
Gma04g00220 196 TIGRFAM small_GTP: small GTP-binding protein domain 7 171 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00220 Gma-Chr4 1865756 1873661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00220 7 180 EF-hand Containing Proteins AT5G27540 27.011 1.02e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00220 K04392 - gmx:100499696 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00220 04 1865756 1873661 Gma11g00718 11 6038015 6040490 ECH
Gma04g00220 04 1865756 1873661 Gma01g01679 01 52463551 52466087 ECH
Gma04g00220 04 1865756 1873661 Gma02g00419 02 4284774 4287732 ECH
Gma04g00220 04 1865756 1873661 Gma16g01169 16 28936511 28942562 ECH
Gma04g00220 04 1865756 1873661 Gma12g00308 12 2504371 2507814 ECH
Gma04g00220 04 1865756 1873661 Gma04g00220 04 1865756 1873661 ECH