Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00201 ATGTTCATTTCCTTGAAGCAACGAAGGAAACAAAATGGTAACAATGCTCTGTTGAATATAAGAGACGGGACCGGGAGCTGGCAAAAGGTTGTCTCTTGGATCTCTGATCTGAAAATGAGTGCATCGAGGTTCATTAAGTGCGTCACCGTCGGCGACGGCGCTGTCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGGACTACGTGCCCACGGTTTTTGACAATTTCAGTGCTAATGTTGTGGTGGATGGAAGCACCGTAAACCTGGGGTTGTGGGATACTGCTGGTCAGGAGGATTATAATAGGCTTAGACCCTTGAGTTATCGAGGAGCTGATGTATTTATACTTGCCTTTTCTCTCATAAGCAAGGCTAGCTATGAAAATATTGCAAAGAAGTGGATCCCTGAACTAAGGCATTATGCCCCTGGTGTTCCAATAATTCTCGTTGGAACAAAGTTAGATCTTCGAGAAGATAAGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAGGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGTTCAAAAACACAGCAGAATGTTAAAGCTGTCTTTGACGCTGCCATCAAAGTGGTTCTTCAACCACCAAAGCAAAAGAAAAAGAAGAGAAAAGCACAGAAAGCTTGCTCAATATTGTGA 708 0.4322 MFISLKQRRKQNGNNALLNIRDGTGSWQKVVSWISDLKMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLREDKQFFIDHPGAVPITTTQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKRKAQKACSIL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00201 235 ProSiteProfiles small GTPase Ras family profile. 40 235 IPR001806 GO:0003924|GO:0005525
Gma06g00201 235 Gene3D - 42 230 IPR027417 -
Gma06g00201 235 Pfam Ras family 46 216 IPR001806 GO:0003924|GO:0005525
Gma06g00201 235 SMART rho_sub_3 47 218 IPR001806 GO:0003924|GO:0005525
Gma06g00201 235 PRINTS Transforming protein P21 ras signature 147 160 - -
Gma06g00201 235 PRINTS Transforming protein P21 ras signature 193 215 - -
Gma06g00201 235 PRINTS Transforming protein P21 ras signature 85 107 - -
Gma06g00201 235 PRINTS Transforming protein P21 ras signature 68 84 - -
Gma06g00201 235 PRINTS Transforming protein P21 ras signature 45 66 - -
Gma06g00201 235 PANTHER RHO FAMILY GTPASE 39 235 IPR003578 GO:0005525|GO:0007264
Gma06g00201 235 SMART ras_sub_4 42 218 - -
Gma06g00201 235 SMART rab_sub_5 45 218 - -
Gma06g00201 235 TIGRFAM small_GTP: small GTP-binding protein domain 45 209 IPR005225 GO:0005525
Gma06g00201 235 PANTHER RAC-LIKE GTP-BINDING PROTEIN ARAC11 39 235 - -
Gma06g00201 235 CDD Rop_like 44 216 - -
Gma06g00201 235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 216 IPR027417 -
Gma06g00201 235 ProSiteProfiles small GTPase Rab1 family profile. 40 235 - -
Gma06g00201 235 ProSiteProfiles small GTPase Rho family profile. 38 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00201 Gma-Chr6 1768024 1773083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00201 45 218 EF-hand Containing Proteins AT5G27540 25.862 2.55e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00201 K04392 - gmx:100798550 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00201 06 1768024 1773083 Gma11g00718 11 6038015 6040490 ECH
Gma06g00201 06 1768024 1773083 Gma01g01679 01 52463551 52466087 ECH
Gma06g00201 06 1768024 1773083 Gma02g00419 02 4284774 4287732 ECH
Gma06g00201 06 1768024 1773083 Gma16g01169 16 28936511 28942562 ECH
Gma06g00201 06 1768024 1773083 Gma12g00308 12 2504371 2507814 ECH
Gma06g00201 06 1768024 1773083 Gma06g00201 06 1768024 1773083 ECH