Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00718 ATGAGCGCTTCTAGGTTCATCAAGTGCGTCACTGTTGGGGATGGTGCTGTGGGCAAAACCTGCTTGCTTATTTCCTACACCAGCAACACTTTCCCCACCGATTATGTGCCGACTGTCTTTGACAATTTCAGTGCAAATGTGGTTGTCAATGGGAGCATTGTGAATCTGGGTTTGTGGGATACTGCTGGACAAGAGGATTACAACAGATTAAGACCTTTGAGTTACCGTGGTGCCGATGTTTTCATATTGGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTCTCTAAAAAGTGGATTCCAGAGTTGAAGCATTATGCACCTGGTGTCCCCATTATTCTGGTTGGCACAAAGCTTGACCTTCGGGATGATAAGCAGTTCTGCATCGACCATCCTGGTGCCGTACCTATTACCACAGCTCAGGGAGAAGAGCTTAGGAAGCTGATTAATGCACCAGCTTACATTGAATGCAGTTCAAAAACACAGGAGAACGTGAAGGCAGTCTTTGATGCAGCCATAAGAGTTGTCCTTCAACCACCTAAGCAGAAGAAAAAGAAGGGTAAAGCACAAAAGGCATGCTCGATATTGTGA 594 0.4529 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSIVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFCIDHPGAVPITTAQGEELRKLINAPAYIECSSKTQENVKAVFDAAIRVVLQPPKQKKKKGKAQKACSIL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00718 197 PRINTS Transforming protein P21 ras signature 7 28 - -
Gma11g00718 197 PRINTS Transforming protein P21 ras signature 30 46 - -
Gma11g00718 197 PRINTS Transforming protein P21 ras signature 47 69 - -
Gma11g00718 197 PRINTS Transforming protein P21 ras signature 109 122 - -
Gma11g00718 197 PRINTS Transforming protein P21 ras signature 155 177 - -
Gma11g00718 197 CDD Rop_like 6 178 - -
Gma11g00718 197 ProSiteProfiles small GTPase Rho family profile. 1 177 - -
Gma11g00718 197 SMART rho_sub_3 9 180 IPR001806 GO:0003924|GO:0005525
Gma11g00718 197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 178 IPR027417 -
Gma11g00718 197 Pfam Ras family 8 178 IPR001806 GO:0003924|GO:0005525
Gma11g00718 197 PANTHER RHO FAMILY GTPASE 1 197 IPR003578 GO:0005525|GO:0007264
Gma11g00718 197 SMART rab_sub_5 7 180 - -
Gma11g00718 197 ProSiteProfiles small GTPase Ras family profile. 2 197 IPR001806 GO:0003924|GO:0005525
Gma11g00718 197 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 1 197 - -
Gma11g00718 197 TIGRFAM small_GTP: small GTP-binding protein domain 7 171 IPR005225 GO:0005525
Gma11g00718 197 Gene3D - 5 192 IPR027417 -
Gma11g00718 197 ProSiteProfiles small GTPase Rab1 family profile. 2 197 - -
Gma11g00718 197 SMART ras_sub_4 4 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00718 Gma-Chr11 6038015 6040490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00718 7 180 EF-hand Containing Proteins AT5G27540 25.862 2.04e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00718 K04392 - gmx:100812451 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00718 11 6038015 6040490 Gma01g01679 01 52463551 52466087 ECH
Gma04g00220 04 1865756 1873661 Gma11g00718 11 6038015 6040490 ECH
Gma06g00201 06 1768024 1773083 Gma11g00718 11 6038015 6040490 ECH
Gma16g01169 16 28936511 28942562 Gma11g00718 11 6038015 6040490 ECH
Gma11g00718 11 6038015 6040490 Gma11g00718 11 6038015 6040490 ECH
Gma12g00308 12 2504371 2507814 Gma11g00718 11 6038015 6040490 ECH
Gma11g00718 11 6038015 6040490 Gma16g01169 16 28936511 28942562 PCT
Gma11g00718 11 6038015 6040490 Gma02g00419 02 4284774 4287732 PCT
Gma16g01169 16 28936511 28942562 Gma11g00718 11 6038015 6040490 PCT
Gma02g00419 02 4284774 4287732 Gma11g00718 11 6038015 6040490 PCT