Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g00170 ATGGATGAAGAATTGGTTGATGAGGCAACCCAATTAGAGGTTGCCGAGGAAACGCAGCGCCAAAACAAAGATTCATCCAACCCGGAATGCCAAAAAATCTTAAAATCCCAAGAAGCCTTCATCCCTGTTAAGCAGGACTACTCCCAGATACCACCTCGGGAATATGATGGTAAAAATGTAGTTGAAGGTATTGACCATGCAGATACATCACAGCATCCTCGTGTAAGCCTTTTTATGGATGATGCTGATGCTATGATTGAAGAGTTAACAGTAAAAAGTTACAATGGCTCAAGCTTGGATATTGGTACATCAAACAACCGAGAGCAGATGTATAATCAGCAGAATCATTGGCAAAATCTCTATCAGCTAGCAAGTAATTCAGGAATTGGAAATTCACTAAGTGATATTGGAACCAGAAACAGTGTCCAAGCTACATCTAGTGCTCGGGAGGATATTGGTTCCTCATCTTTCCCAGAGATGCTAGCTAGAAAATCTCTCAGTGATGGCCAGAGCAATGCCATGGAACACTTGGCATCTGCTGAAAATAAAGGGGGTGCAGGTGATGTTCATCAAGGAACACGGACAAAAATTATATCCCAATCAGGATTTGCGGAGTTTTTCATCAAAAATACACTGAGGGGTAAGGGTATTGTATATAGAGGTCCATCATCTGATGGCTTCTGTGTTCAGTCTAGAGAGCAAAACcggatgaagattgggattgatgcagatcagaataggatgaagactggcattggtgcagatcagaatcggatgaagactgtcattgatgtgattcagaatcggctgaagactggcattgatgcagatcagaatccgatgaagactggcattgatcagagtcggatgaagaccggcattgatacagatcagaatcagatgaaaactggcattggtactgatcagaaacagatgaagaccagcattggtactCACTTGAACTCTAATCAATCAGTTGGTTATGGTTCCAAAACTGCAAAGTTTCCTTCTTATTGTGGTGCTATGCCTAGATCTGGCAGGTCTGAATGTGACGGTGTGACTTTGAGAGAATGGTTGAAACACGGGAACCACAAAGCAAACAAGGTGGAAAGTTTGAATATATTTAGGAAGATTGTGGATTTGGTGGGCAATTCTCACTCTCAGGGAGTTGCACTGCATAACCTGTGTCCATCTTATATTAAATTGACGCCATCAAACCAGGTCATGTACCTTGGTTTACCTGTTCAAAAACAGATGGTGGATAGTGTTGTAAATTCTGAAGTTGTCCACTTAGATAATTCTTTTATTAGAAAAAGGTTGTCAGAGCAAGTAACACTTCCCTCTCTTGATATGGGGTCAAAGAAACAAAAATTTAATGAGAATGTAAGAGTTACTGGTGGTGACTTGTGTCTTGAAACTGCAAGTGATAGGAAACTTCATAGTCATACAGTTGGATCACAAGATTATTACAATGAATATGAGGAAGGTACCCAATTCTCTAAATATAACATTGGAAGAATGTCTAGCATCCCTCGTGTATCTAATGCAGGTCAAAGGCCATTGACTTCATGCGAAAAATTTGAAAATAAATGGTACACAAGTCCTGAGGGAGGCTACACAACATCATCAAATATCTACTGTCTTGGTGTTCTCCTTTTTGAGTTACTTGGTCATTTTGACTCTGAAAGAACACATATTGCAGCCATGTCTGATCTTCGTCATAGGATTCTTCCTCCAATTTTCCTATCAGAAAATCCTAAGGAAGCTGGCTTTTGTCTTTGGCTGTTGCATCCTGAACCATCATCACGTCCATCAACAAGGGAAATCCTTCAATCTGAATTGATTAATGGATTGCAAGAGTTGTTTAGTGAGGAATTGTCATCAAGTATTGACCAAGAAGATGCAGAATCAGAATTGTTATTGCATTTCCTCGTTTTGTTAAAAGAGCAGAAGCAGAACAATGCCTTCAAACTGGTAGAAGATATCAAGTGCTTGGAATCAGATATTGAAGAGGTGGATAGGAGGCATGACTCAAGAAAATCCTTGGTTTCCTCTGGCTTGCAGAATGATTACTCTTGTCAGAAAGAGATTATGCCTCTTAAAAAGGAATCTTTGAGTTTGGAAATGCTGCCCTCGATATCCCCAATCTCTAATTCAAATGAAGTGAGATTGATGAGAAATATATGCCATCTTGAAAGTGCTTATTTTTCCATGAGATCCAAACTTCAGCTTTCTGAAACAGATGCTTCAACTCACCCTGATAAAGATATACTAAGAAATCGTGAGAACTGGAATGTGGCTGAAAAAAGCGAGGAACAACCTAAGAAAGATACTTTAGGGGCATTCTTTGATGGTTTGTGCAAGTATGCACGCTATTGCAAGTTTGAAGTGCGGGGTGTACTAAGAAATGCTGATTTTAACAATCCTGCAAATGTAATTTGCTCTCTAAGCTTTGATCGGGATGCAGATTACTTTGCTTCTGCTGGGATATCTAAGAAAATAAAAATTTTCGAGTTTAGTGCACTTTGCAATGACTCTGTTGATATCCATTATCCTGCAGTTGAGATGTCAAACAGATCAAAACTCAGCTGTGTTTGCTGGAATAACTATATTAAGAACTATCTTGCTTCTACAGATTATGACGGTATAGTGAAGTTATGGGATGCTAGTACAGGCCAAGAATTTTCTCAATTCACTGAACATGAGAAGAGGGCTTGGTCTGTTGACTTCTCTGCAGTATGCCCTACAAAATTTGCCAGTGGAAGTGATGATTGTACTGTCAAGCTGTGGAGCATCAGTGAGAGAAACTGTTTAGGCACAATCAGGAACGTTGCTAATGTCTGCTGTGTTCAGTTCTCTGCTCATTCCTCCCATTTGCTGGCCTTTGGATCTGCGGATTACTCAACATATTGTTATGATCTTCGCAATCTCAGAAGTCCCTGGTGTGTACTGGCTGGCCATCGTAAAGCTGTGAGCTATGTCAAATTCTTGGACTCTGAAACACTTGTTTCTGCTTCTACTGATAATACATTGAAGATCTGGGATCTCAATAAAACCTCTCCTGTGGGTGCATCCATTAATGCTTGCAGCCTAACTCTGTCAGGACATACTAATGAGAAGAATTTTGTGGGTCTATCGGTGGCTGATGGATATATTGCATGCGGTTCAGAAACAAATGAGATTTACACCTACTATAGATCGCTTCCCATGCCAATCACTTCACACAAATTTGGGTCCATTGATCCCATTTCTGGTAAAGACACTGATGATGACAATGATGGTTTAAAGGAAAGGTTCCCTGTGGCGGCAACTTTCTTGCAGTTTTGCGAGTTCCTGGAGTTTTGCACTTGTCGCCCTTGCACTCAGGCTAAATCCCATCAACCTGCTGGGAGCATATAA 3399 0.3736 MDEELVDEATQLEVAEETQRQNKDSSNPECQKILKSQEAFIPVKQDYSQIPPREYDGKNVVEGIDHADTSQHPRVSLFMDDADAMIEELTVKSYNGSSLDIGTSNNREQMYNQQNHWQNLYQLASNSGIGNSLSDIGTRNSVQATSSAREDIGSSSFPEMLARKSLSDGQSNAMEHLASAENKGGAGDVHQGTRTKIISQSGFAEFFIKNTLRGKGIVYRGPSSDGFCVQSREQNRMKIGIDADQNRMKTGIGADQNRMKTVIDVIQNRLKTGIDADQNPMKTGIDQSRMKTGIDTDQNQMKTGIGTDQKQMKTSIGTHLNSNQSVGYGSKTAKFPSYCGAMPRSGRSECDGVTLREWLKHGNHKANKVESLNIFRKIVDLVGNSHSQGVALHNLCPSYIKLTPSNQVMYLGLPVQKQMVDSVVNSEVVHLDNSFIRKRLSEQVTLPSLDMGSKKQKFNENVRVTGGDLCLETASDRKLHSHTVGSQDYYNEYEEGTQFSKYNIGRMSSIPRVSNAGQRPLTSCEKFENKWYTSPEGGYTTSSNIYCLGVLLFELLGHFDSERTHIAAMSDLRHRILPPIFLSENPKEAGFCLWLLHPEPSSRPSTREILQSELINGLQELFSEELSSSIDQEDAESELLLHFLVLLKEQKQNNAFKLVEDIKCLESDIEEVDRRHDSRKSLVSSGLQNDYSCQKEIMPLKKESLSLEMLPSISPISNSNEVRLMRNICHLESAYFSMRSKLQLSETDASTHPDKDILRNRENWNVAEKSEEQPKKDTLGAFFDGLCKYARYCKFEVRGVLRNADFNNPANVICSLSFDRDADYFASAGISKKIKIFEFSALCNDSVDIHYPAVEMSNRSKLSCVCWNNYIKNYLASTDYDGIVKLWDASTGQEFSQFTEHEKRAWSVDFSAVCPTKFASGSDDCTVKLWSISERNCLGTIRNVANVCCVQFSAHSSHLLAFGSADYSTYCYDLRNLRSPWCVLAGHRKAVSYVKFLDSETLVSASTDNTLKIWDLNKTSPVGASINACSLTLSGHTNEKNFVGLSVADGYIACGSETNEIYTYYRSLPMPITSHKFGSIDPISGKDTDDDNDGLKERFPVAATFLQFCEFLEFCTCRPCTQAKSHQPAGSI 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g00170 1132 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 984 1017 - -
Gma11g00170 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 898 940 IPR001680 GO:0005515
Gma11g00170 1132 Gene3D - 783 1103 IPR015943 GO:0005515
Gma11g00170 1132 SUPERFAMILY Protein kinase-like (PK-like) 350 621 IPR011009 -
Gma11g00170 1132 Gene3D Transferase(Phosphotransferase) domain 1 350 624 - -
Gma11g00170 1132 PANTHER PROTEIN SPA1-RELATED 2 1 1093 - -
Gma11g00170 1132 SUPERFAMILY WD40 repeat-like 807 1077 IPR036322 GO:0005515
Gma11g00170 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 855 897 IPR001680 GO:0005515
Gma11g00170 1132 Pfam WD domain, G-beta repeat 893 931 IPR001680 GO:0005515
Gma11g00170 1132 Pfam WD domain, G-beta repeat 983 1015 IPR001680 GO:0005515
Gma11g00170 1132 ProSitePatterns Trp-Asp (WD) repeats signature. 1002 1016 IPR019775 -
Gma11g00170 1132 PANTHER PROTEIN SPA1-RELATED 2 1 1093 IPR044630 GO:0009640
Gma11g00170 1132 SMART WD40_4 794 838 IPR001680 GO:0005515
Gma11g00170 1132 SMART WD40_4 848 888 IPR001680 GO:0005515
Gma11g00170 1132 SMART WD40_4 977 1015 IPR001680 GO:0005515
Gma11g00170 1132 SMART WD40_4 934 973 IPR001680 GO:0005515
Gma11g00170 1132 SMART WD40_4 891 931 IPR001680 GO:0005515
Gma11g00170 1132 SMART WD40_4 1026 1065 IPR001680 GO:0005515
Gma11g00170 1132 ProSitePatterns Trp-Asp (WD) repeats signature. 875 889 IPR019775 -
Gma11g00170 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 984 1024 IPR001680 GO:0005515
Gma11g00170 1132 MobiDBLite consensus disorder prediction 1 29 - -
Gma11g00170 1132 PRINTS G protein beta WD-40 repeat signature 918 932 IPR020472 -
Gma11g00170 1132 PRINTS G protein beta WD-40 repeat signature 1002 1016 IPR020472 -
Gma11g00170 1132 PRINTS G protein beta WD-40 repeat signature 875 889 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g00170 Gma-Chr11 1315640 1324402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g00170 814 960 Miscellaneous Gene Families AT5G08390 25.828 4.53e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g00170 K16240 - gmx:100778303 2185.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g00170 11 1315640 1324402 Gma11g00170 11 1315640 1324402 ECH
Gma01g02244 01 57633140 57641558 Gma11g00170 11 1315640 1324402 GST
Gma11g00170 11 1315640 1324402 Gma05g02093 05 42212237 42218887 PCT
Gma11g00170 11 1315640 1324402 Gma08g00201 08 1746497 1754501 PCT