Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00201 ATGATAAGTTTTAACAGTATGGACGAAGAATTGGAGGTTGGTGAGGGTGTGCAACATCAAACCAAAGATGATGGATTTTCACTAAACCCTGAATTCCCCAAAATATTAAAACCCCAAGAAATATACACTTCCTATTCCCACATCTCACAAGATAAGAATGTGGTTGAAGCAAGGGAGCATCTGCACCCAAGTCTATTTTCTGATGGTGCTGGTGCCATGGTTGAAGAACTAACAGTGAAAAGTTACAATGGTTCTAGACTACATATTGGTACTTTGAACAATCCAGGGCCTTTGCATAATAGCCGGAGTCAATGGCGGCATATTTATCAACCGGTTGGTGATTCAGGCATGGGAAGTGATTGCATAATAGCCAGAAAGAGTGTTGAGGCTACATCTAGTGCTTGGGAGGATATTGGGTCCACGTCTTTTCGAGACATGTTAGATAGAAAACCAGTCAATGATGAACAGGGCCATGTCATGCAGCACCTGTCCACTGACGTGCATACCGCTGAACATAAAGAGGATGAAGGTCATGCTCACGAAGGAATACAAACAAAAGTTATACACAAATCAGGATTTGCAGAGTATTCTGGTAGAAGTACATTGAAGGGAAAGGGTGTTGTATGTAAAGGTCCATCTTCTAATGGCTTATATATTGAGTCTAGAGATCAGAACCCGATAAAGTCTGGTATTGACACTCAGATGGATTCTAATGCATTGCCGAGCTCAGGTTTAAAGACTGCAAAGTCTCCTCATAATGCTACAGGGCCAGGATCTGGTGGGTCTGACACTGATGGTGTGACTTTGAGAGAATGGTTGAAATCTAGGCACCACAAACGGAGCAAAACAGATCATTTAAGTATATTTAGAAAAATTGTGGATTTGGTTGATGGTTCTCACTTCGAGGGAGTTGCAATGCGCAATCTGTACCCTTCTTATATTAAATTGTTGCCATCAAACCAGGTTATGTACCTTGGGTTGCCTGCTCAGAAACAGACATTAGATAGTGTTGCAAATTCTGAAGTTCTTCAGCTAGATAATTCTTTTATTAGAAAAAGGCTGTCAGAGACGGTAATATCTCCCTCTCTTAATTTGCAATTGAAGAAACAGAAATTCAATGAAAATGCTAGAGTTGCTGGTGATTGGAGTCAATGCCCTCCTAGGACTGACTTGTATCTTCAAATTGCCAATGATATTAAAGTCAATGCAGTGGGATCACAAGATTATTACAATGAATACAAGGAAGATATCCAATTTTCTAAACATAATATTGGGAGAATGTCTCGCATCCCTCACATATCTAGTGCAGGTCAATTGCAATTGACTTCTTTAAATGAAGGATTGGAAGATAAATGGTATGCAAGTCCTGAGGGTGGTTGCACAACATCATCAAATATCTACTGTCTTGGAGTCCTTCTTTTTGAGTTACTTAATCATTTTGACTCAGAAAGAGCACATATTGCTGCAATGTCTAATCTTCGCCATAGGATTCTTCCTTCAGTTTTCCTATCAGAGTATCCTATGGAAGCAGGATTTTGCCTTTGGATGATGCATCCTGAACCATCATCACGTCCAACATTAAGGGAGATCCTACAATCTGAAGTGATTAATGGAATCCATGAGGTGTACTGTGAGGAATTATCATCAAGTCTCAATCAAGATGATGCAGAATCAGAATTGCTATTGCATTTCCTCATCTCACTAAAAGAGCAGAAGCACATGGATGCCAACAAATTGGCAGAAGAAATCAGATGCTTAGAATCAGATGTGAAAGAGGTGGAGAGGAGACATGACTTGAGAAAATCCTTGCTTCCCTCAAGCTTGCAGAATGACTCCTCTCTTCAAATAGAGAATGTATCTCTTAAAGAATCCATAATTTCTAATGCAAATGAACTGAGATTGATGAAAATTATACCCCGACTTGAAAGTGCTTACTTTTCCATGAGATCCAAAATTAAGCTTCCTGAAACAGATACTGCAACTCACCCAGATAAAGATATACTGATAAATCATGACAATTGGTGTGGAGCTCAAAAAGACATGGAACAACATAAAGCGACAGATGCTTTAGGAGCTTTCTTTGACAGTTTGTGCAAGTATGCACGTTATAGCAAGTTTGAAGTGCGGGGCATACTAAGAAATACTGATTTTAATAATCCTGCAAATGTAATATGCTCTCTGAGTTTTGATAGGGATGAAGATTACTTTGCTGCTGCTGGGATATCAAAGAAAATTAAAATATTTGAGTTCAATGCACTTTTCAATGATTCCATTGACATCCATTATCCTGTAGTTGAGATGTCAAACAGATCAAGGCTCAGTTGTGTTTGCTGGAATAACTACATCCAGAACTATCTTGCCTCCACAGACTATGATGGTGCTGTTAAGCTATGGGATGCTAATACAGGCCAAGGGTTTTCTCGATTCACCGAACATGAAAAGAGGGCTTGGTCTGTTGATTTCTCTTTGTTATGCCCTACTAAATTTGCCAGTGGGAGTGATGATTGTTCTGTGAAACTGTGGAATATCAATGAGAAAAACAGTTTAGCCACAATCAGGAATGTTGCTAATGTCTGCTGTGTTCAGTTCTCTACTCATTCCTCTCATTTGCTGGCCTTTGGATCTGCTGATTACTCAGCATATTGCTATGATCTTCGCAATCTTAGAAACCCTTGGTGTGTGTTGGCTGGCCATCGTAAAGCTGTAAGCTATGTCAAATTCTTGGACTCTGAAACACTTGTTTCTGCATCAACCGATAACATGTTGAAGATCTGGGATCTCAATAAAACCTCTCCTGTGGGTCCATCAACTAGTGCTTGCAGCTTAACCCTGTCTGGACATACTAATGAGAAGAATTTTGTGGGTTTATCAGTTGCCGATGGATATATAGCATGTGGTTCAGAAACAAATGAGGTTTATGTCTACCATAAATCTCTTCCCATGCCAGTCACTTCGCACAGGTTTGGGTCCATTGATCCTATTTCTGGTGAAGAGACAGATGATGACAATGGTTTGTTTGTTTCAAGTGTGTGCTGGAGAGGAAAATCAGACATGGTTGTTGCAGCCAATTCAAGTGGATGTATAAAAGTTCTACAGATGGTTTGA 3105 0.3977 MISFNSMDEELEVGEGVQHQTKDDGFSLNPEFPKILKPQEIYTSYSHISQDKNVVEAREHLHPSLFSDGAGAMVEELTVKSYNGSRLHIGTLNNPGPLHNSRSQWRHIYQPVGDSGMGSDCIIARKSVEATSSAWEDIGSTSFRDMLDRKPVNDEQGHVMQHLSTDVHTAEHKEDEGHAHEGIQTKVIHKSGFAEYSGRSTLKGKGVVCKGPSSNGLYIESRDQNPIKSGIDTQMDSNALPSSGLKTAKSPHNATGPGSGGSDTDGVTLREWLKSRHHKRSKTDHLSIFRKIVDLVDGSHFEGVAMRNLYPSYIKLLPSNQVMYLGLPAQKQTLDSVANSEVLQLDNSFIRKRLSETVISPSLNLQLKKQKFNENARVAGDWSQCPPRTDLYLQIANDIKVNAVGSQDYYNEYKEDIQFSKHNIGRMSRIPHISSAGQLQLTSLNEGLEDKWYASPEGGCTTSSNIYCLGVLLFELLNHFDSERAHIAAMSNLRHRILPSVFLSEYPMEAGFCLWMMHPEPSSRPTLREILQSEVINGIHEVYCEELSSSLNQDDAESELLLHFLISLKEQKHMDANKLAEEIRCLESDVKEVERRHDLRKSLLPSSLQNDSSLQIENVSLKESIISNANELRLMKIIPRLESAYFSMRSKIKLPETDTATHPDKDILINHDNWCGAQKDMEQHKATDALGAFFDSLCKYARYSKFEVRGILRNTDFNNPANVICSLSFDRDEDYFAAAGISKKIKIFEFNALFNDSIDIHYPVVEMSNRSRLSCVCWNNYIQNYLASTDYDGAVKLWDANTGQGFSRFTEHEKRAWSVDFSLLCPTKFASGSDDCSVKLWNINEKNSLATIRNVANVCCVQFSTHSSHLLAFGSADYSAYCYDLRNLRNPWCVLAGHRKAVSYVKFLDSETLVSASTDNMLKIWDLNKTSPVGPSTSACSLTLSGHTNEKNFVGLSVADGYIACGSETNEVYVYHKSLPMPVTSHRFGSIDPISGEETDDDNGLFVSSVCWRGKSDMVVAANSSGCIKVLQMV 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00201 1034 SMART WD40_4 760 799 IPR001680 GO:0005515
Gma08g00201 1034 SMART WD40_4 888 926 IPR001680 GO:0005515
Gma08g00201 1034 SMART WD40_4 802 842 IPR001680 GO:0005515
Gma08g00201 1034 SMART WD40_4 845 884 IPR001680 GO:0005515
Gma08g00201 1034 SMART WD40_4 937 976 IPR001680 GO:0005515
Gma08g00201 1034 SMART WD40_4 705 749 IPR001680 GO:0005515
Gma08g00201 1034 SMART WD40_4 984 1032 IPR001680 GO:0005515
Gma08g00201 1034 Coils Coil 576 596 - -
Gma08g00201 1034 ProSitePatterns Trp-Asp (WD) repeats signature. 913 927 IPR019775 -
Gma08g00201 1034 Pfam WD domain, G-beta repeat 894 926 IPR001680 GO:0005515
Gma08g00201 1034 Pfam WD domain, G-beta repeat 809 842 IPR001680 GO:0005515
Gma08g00201 1034 MobiDBLite consensus disorder prediction 227 266 - -
Gma08g00201 1034 PANTHER PROTEIN SPA1-RELATED 2 50 1034 - -
Gma08g00201 1034 PRINTS G protein beta WD-40 repeat signature 786 800 IPR020472 -
Gma08g00201 1034 PRINTS G protein beta WD-40 repeat signature 829 843 IPR020472 -
Gma08g00201 1034 PRINTS G protein beta WD-40 repeat signature 913 927 IPR020472 -
Gma08g00201 1034 ProSiteProfiles Trp-Asp (WD) repeats profile. 809 851 IPR001680 GO:0005515
Gma08g00201 1034 SUPERFAMILY Protein kinase-like (PK-like) 448 546 IPR011009 -
Gma08g00201 1034 Gene3D Transferase(Phosphotransferase) domain 1 265 545 - -
Gma08g00201 1034 SUPERFAMILY WD40 repeat-like 717 1031 IPR036322 GO:0005515
Gma08g00201 1034 ProSiteProfiles Trp-Asp (WD) repeats profile. 766 808 IPR001680 GO:0005515
Gma08g00201 1034 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 895 928 - -
Gma08g00201 1034 ProSiteProfiles Trp-Asp (WD) repeats profile. 895 935 IPR001680 GO:0005515
Gma08g00201 1034 PANTHER PROTEIN SPA1-RELATED 2 50 1034 IPR044630 GO:0009640
Gma08g00201 1034 Gene3D - 693 1034 IPR015943 GO:0005515
Gma08g00201 1034 MobiDBLite consensus disorder prediction 227 262 - -
Gma08g00201 1034 MobiDBLite consensus disorder prediction 1 29 - -
Gma08g00201 1034 ProSitePatterns Trp-Asp (WD) repeats signature. 786 800 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00201 Gma-Chr8 1746497 1754501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00201 829 975 Miscellaneous Gene Families AT5G08390 29.530 4.09e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00201 K16240 - gmx:100776980 2092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g00201 08 1746497 1754501 Gma08g00201 08 1746497 1754501 ECH
Gma05g02093 05 42212237 42218887 Gma08g00201 08 1746497 1754501 GST
Gma01g02244 01 57633140 57641558 Gma08g00201 08 1746497 1754501 PCT
Gma11g00170 11 1315640 1324402 Gma08g00201 08 1746497 1754501 PCT