Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g01427 ATGGGGACTGAAAACCCTTGTCGTCCAACCTATCCTTCAAGGCCACCCTTTGCTGCTGCAGCACAGGGTGTGACACCTTTTGCACCAACTGGTGGTGCCATGGTTGGATTAGAGCCTCCTTCTTTTCGACCTACTCCTCCTGCTCCACCCTTGGCTTCCACACCATTTTCATCATCCGGGCCAGCAGTTCGACCCTGGGTGCCACATTTTAGACCCGTGCCACCGGGGCAGTTTAATGACCCTTCAGTGCCTCCTCCTCCTTCCAATTTCCCACCTGCTGGTGGACCTTTCCAGCATTTTCCAGGGCAACATTTTTCCTCAAATGCTCAAGCACCTTCCCCACATGTTCCGCCTATGGGACAACCGGCAATTCAACCTTCTGCTGGTCAAACACACCCTTTTCCACCTTCTCTTCAGCCGCAACCTTGGCCGCAGTCACAGACCCTTTTGTTTCAATGGGGTCTCCCTCTCCTGCACTTTCAGGCTGGTGCAGATATTCAAGCTCCACCTATGCATTCCTCTCACCCTTCCAATCAAGGAAATTATGGACCTATCCCACCTGCAGCATCTTTGCCTTTTCAACCTCATCAAGGAGGTTATGTTTCGCAGCCCCCAATGGCTGCTCCGTTAGGCATCCAGCCCATGCAACACCCAGGATCTGGACCGCCTATAGGTGATGTTCAGGGTTTGACAGAAGACTTCAATTCGCTATCAATTCAAGCTCGTCCTGGACTCGTGGAGTCGTCCATTGATGCTAACGAACTGCCTAGGCCATTGGATGGTGACGGGGAGCCAAAGTCTTTATCTGAGATGTATCCCATGAACTGCAATTCTAGATATCTACGTCTCACAACCAGTGCAATTCCTATCTCACAGTCCTTATGTTCGAGGTGGCCTCTTCCTCTTGGAGCAGTTGTATGTCCGCTTGCAGAATATCCTGATGGGGAAGAGGTACCCATAGTTAATTTTGCCGCATCTGCCGTTGTACGTTGTAGGAGATGCTGCACATATGTCAATCCATATGTGACATTTACTGAAGGTGGAAGAAAGTTCCGGTGCAACACCTGCTCCTTGCTTAATGAAGTTCCTAGTGAATATTATGCACAATTAGATGCCACTGGCAGAAGAATTGATTTGAATCAACGACCTGAGCTTACAAAGGGTACTGTAGAATATGTTGCCCCAATAGATTATATGGTGCGGCCTCCTATGCCTCCAGTATATTTCTTCCTCATTGATGTTTCCATAACTGCATTTAGAAGTGGAATGATTGAGGTTGTGGCCCAAACAATCAGGTCATGCTTAGATGAGTTGCCTGGCTTTCCACGAACACAAATTGGGTTTGCAACTTTTGACAGCACAATACATTTTTATAACATGAAGTCATCCTTGGCTCAACCACAGATGTTGGTGGTCTCAGATCTGGATGACATATTTGTTCCCCTGCCGGATGATCTCCTTGTATCAGAATCAAGAAGTGTGGTCGAAACCTTTCTTGATAGTCTGCCATCCATGTTCCAGGACAACATGAATTTGGAATCTGCATTTGGTCCTGCTCTTAAGGCTGCCTTTATGATTATGAGTCAACTTGGAGGGAAATTGTTAATTTTTCAAAACACACTCCCATCTCTTGGTGTTGGTCGCTTGAAATTACGTGGAGATGATTCTAAAGTTTATGGCACAGATAAAGAACATGTGTTAAGATTGCCAGAAGATCCCTTTTACAAGCAAATGGCTGCTGAGTTTTCTAAATGCCAGATCTTAGTGAATATGTATGCATTCAGTGATAAGTACACTGACATAGCATCTCTAGTTAAATATTTACAATTCCTTCAACTTCTCCGAACTCTGGCAAAATATACTGTTGGTCAAGTGTATTACTATCCAGCTTTCCAATCAGTCATTCATGGGGAGAAACTACAAAATGAGCTAAGGAGAGACCTTACCAGAGAAACTGGCTGGGAAGCTGTATTGCGAATTAGATGTGCAAAAGGTTTGTGTCTGATTCACAACTTATCATGGAAACTTTATGCTAAGTTGCATTGTTGTATACTGCATCTTGCGGAGAAAGGCGAATCAGAGCTAGTAATTGAGAAAACATTGTCCCATAAACTGGAAGAAGCACGGAGTGTTGTACAACTAAGAATTGTGAAAGGCCTCCCAGAGTATCGAAATCTATATGCTGTGCAACATTGCTTGGTGAATAGGATGATATATCTTGAGTCATTAAAGTTCCTGCCCTTGTCTGGTTTAGCTCTTTGTAGATCAACACCTCTCCGTGGTGGGTATGGGGATGTTCCTCTAGATGAACAGTGTGCAGCAGGACACACAATGATGACCCTACCAATAAAAGTGTTGTTCAAACTTCTCTACCCCAGTTTGCTTCGAATTGATGAATATCTTCTAAAGAAACATTGA 2418 0.4487 MGTENPCRPTYPSRPPFAAAAQGVTPFAPTGGAMVGLEPPSFRPTPPAPPLASTPFSSSGPAVRPWVPHFRPVPPGQFNDPSVPPPPSNFPPAGGPFQHFPGQHFSSNAQAPSPHVPPMGQPAIQPSAGQTHPFPPSLQPQPWPQSQTLLFQWGLPLLHFQAGADIQAPPMHSSHPSNQGNYGPIPPAASLPFQPHQGGYVSQPPMAAPLGIQPMQHPGSGPPIGDVQGLTEDFNSLSIQARPGLVESSIDANELPRPLDGDGEPKSLSEMYPMNCNSRYLRLTTSAIPISQSLCSRWPLPLGAVVCPLAEYPDGEEVPIVNFAASAVVRCRRCCTYVNPYVTFTEGGRKFRCNTCSLLNEVPSEYYAQLDATGRRIDLNQRPELTKGTVEYVAPIDYMVRPPMPPVYFFLIDVSITAFRSGMIEVVAQTIRSCLDELPGFPRTQIGFATFDSTIHFYNMKSSLAQPQMLVVSDLDDIFVPLPDDLLVSESRSVVETFLDSLPSMFQDNMNLESAFGPALKAAFMIMSQLGGKLLIFQNTLPSLGVGRLKLRGDDSKVYGTDKEHVLRLPEDPFYKQMAAEFSKCQILVNMYAFSDKYTDIASLVKYLQFLQLLRTLAKYTVGQVYYYPAFQSVIHGEKLQNELRRDLTRETGWEAVLRIRCAKGLCLIHNLSWKLYAKLHCCILHLAEKGESELVIEKTLSHKLEEARSVVQLRIVKGLPEYRNLYAVQHCLVNRMIYLESLKFLPLSGLALCRSTPLRGGYGDVPLDEQCAAGHTMMTLPIKVLFKLLYPSLLRIDEYLLKKH 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g01427 805 PANTHER SEC24-RELATED PROTEIN 35 666 - -
Gma10g01427 805 PANTHER SEC24-RELATED PROTEIN 695 799 - -
Gma10g01427 805 Pfam Sec23/Sec24 zinc finger 329 366 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Gma10g01427 805 MobiDBLite consensus disorder prediction 1 143 - -
Gma10g01427 805 Pfam Sec23/Sec24 helical domain 695 784 IPR006900 GO:0006886|GO:0006888|GO:0030127
Gma10g01427 805 Gene3D - 310 386 - -
Gma10g01427 805 Pfam Sec23/Sec24 trunk domain 403 647 IPR006896 GO:0006886|GO:0006888|GO:0030127
Gma10g01427 805 MobiDBLite consensus disorder prediction 168 187 - -
Gma10g01427 805 Gene3D von Willebrand factor, type A domain 405 650 IPR036465 -
Gma10g01427 805 MobiDBLite consensus disorder prediction 40 54 - -
Gma10g01427 805 CDD Sec24-like 403 652 IPR041742 GO:0006886|GO:0006888|GO:0030127
Gma10g01427 805 SUPERFAMILY Zn-finger domain of Sec23/24 320 402 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Gma10g01427 805 PANTHER OS04G0129500 PROTEIN 35 666 - -
Gma10g01427 805 PANTHER OS04G0129500 PROTEIN 695 799 - -
Gma10g01427 805 SUPERFAMILY beta-sandwich domain of Sec23/24 168 672 - -
Gma10g01427 805 Gene3D Sec23/Sec24 helical domain 651 805 - -
Gma10g01427 805 SUPERFAMILY Helical domain of Sec23/24 695 791 IPR036175 GO:0006886|GO:0006888|GO:0030127
Gma10g01427 805 SUPERFAMILY vWA-like 403 651 IPR036465 -
Gma10g01427 805 MobiDBLite consensus disorder prediction 67 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g01427 Gma-Chr10 41329525 41336494 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g01427 K14007 - gmx:100791083 1054.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01427 10 41329525 41336494 Gma20g00919 20 35718810 35724780 GST
Gma19g02145 19 50334626 50343177 Gma10g01427 10 41329525 41336494 PCT
Gma03g02111 03 46652730 46660731 Gma10g01427 10 41329525 41336494 PCT
Gma10g01427 10 41329525 41336494 Gma19g02145 19 50334626 50343177 PCT
Gma10g01427 10 41329525 41336494 Gma03g02111 03 46652730 46660731 PCT