Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01898 ATGCCTCTCAGACTCGAAATCAAGCGAAAGCTTGCCCAAAGATCAGAGAGAGTAAAGTCTGTGGATCTACATCCAACAGAACCATGGATTCTAGCAAGTTTGTACTCTGGAACTGTCTGTATCTGGAACTACCAATCTCAGACCATGGCCAAGTCTTTTGAGGTTACTGAGTTACCAGTTAGGTCAGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCAGGGGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAAAGTATTTGAGGCACATACAGATTACATTAGGTGTGTGGCAGTTCATCCTACCCTTCCATATGTGTTGTCATCATCTGATGATATGCTCATAAAGCTTTGGGATTGGGAAAAGGGCTGGATCTGTACCCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGATTTGGAATCTTGGCTCTCCTGACCCCAATTTTACGTTGGATGCCCATCAAAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAACCTTACCTGATAACTGGTTCTGATGATCACACTGCCAAGGTATGGGACTATCAAACCAAAAGTTGTGTCCAGACTCTAGAAGGTCACACACACAATGTATCTGCTGTTTGCTTTCATCCTGAACTACCTATAATCATTACTGGCTCTGAGGATGGAACAGTGCGCATTTGGCATTCAACAACTTATAGGCTTGAGAACACATTGAACTATAGTCTTGAAAGAGTTTGGGCTATTGGATACCTGAAGGGTTCACGTCGGGTCGTGATAGGCTATGATGAAGGTACTATTATGGTCAAACTTGGCCGAGAAGAACCTGTAGCCAGCATGGATAACAGTGGGAAAATAATTTGGGCTAAGCATAATGAAATTCAAACTGTCAATATAAGGAGTGTAGGAGCAGATGTGGAGATTGCTGATGGAGAAAGGTTACCATTGGCTGTTAAGGAGTTGGGCACCTGTGATCTCTATCCTCAAAGTCTAAGGCACAATCCAAATGGGAGGTTCGTTGTTGTTTGTGGAGATGGGGAATATATTATATACACTGCTTTGGCATGGAGAAATAGATCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTCAGATGGGGAGTATGCTGTAAGAGAAAGTACATCGAAGGTTAAAATTTTCAGCAAAAATTTCCAGGAAAAGAAGAGTATCCGACCAACTTTTTCAGCTGAGCGAATATTTGGCGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTACGATTGGGTTGAGTGTAGGTTGATTCGTCGTATTGATGTTAATGTTAAAAACCTGTACTGGGCTGATAGCGGTGATTTAGTGACGATTGCTAGTGATACATCATTCTATATCCTTAAGTACAATCGTGATGTCGTTGCATCATATTTAGATAGTGGAAGCCCTGTAGATGAGCAAGGTGTTGAAGATGCCTTTGAGCTCCTTCATGAAATGAATGAACGTGTCAGGACAGGGATCTGGGTTGGGGATTGTTTTATCTACAACAATTCTTCTTGGAGGCTTAACTATTGTGTTGGTGGTGAGGTTACTACAATGTTTCATTTGGACCGTCCTATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAAGGTCTATTTGATGGACAAAGAATTCAATGTTATGGGATACACGCTACTTTTAAGTTTGATTGAATACAAGACACTTGTCATGCGTGGTGATTTGGAAAGGGCCAATGAAATTCTACCATCAATTCCTAAAGAGCATCATAACAGTGTGGCTCATTTCCTGGAATCACGAGGGATGATAGAGGATGCTCTTGAAGTAGCTACCGACCCTGACTATAGGTTTGATCTAGCCATACAGCTTGGAAGATTAGAGGTTGCTAAGGGTATTGCCACTGAAGTGCATAGTGAGTCCAAATGGAAGCAATTGGGAGAATTAGCCATGTCTACTGGAAAGTTAGAAATGGCCGAAGAGTGTTTAAAACAAGCAATGGATTTGAGTGGGTTATTGCTGCTATATTCTTCTTTAGGAGATGCTGAAGGAATATCAAAACTTGCAACTCTTGCTAAAGAGCAAGGGAAGAATAATGTTGCATTCCTTTGCTTATTCATGTTGGGTAAACTTGAGGACTGCCTTCAACTTTTGGTAGAAAGCAATCGGATTCCAGAGGCTGCTTTAATGGCTCGATCCTATCTCCCAAGCAAGGTCTCAGAGATAGtggcaatttggagaaaagatctcagtaagGTTAATCCAAAAGCCGCCGAATCATTGGCTGATCCTGAGGAGTATCCTAATTTGTTTGATGATTGGCAAGTTGCACTTGCTGTTGAATCTAAAGCTACAGAAACAAGAGGCATTTACTCTCCTGCATCTGAGTATGTGAAACAGGCTGATAAATCACATATCACCCTTGTTGAAGCTTTCAGAAACATGCAGATAGAAGAAGGGGATCAGCCTCTTGAGAACGGGGACTCTAACCATGAGTTGACTGAACAAAATGGAGAAGAGCACTATACAGAGGAACAAaatggagaaggaagccaagaggaggcagttgtagtggatgccgattctactgatggtgcagtgctcgtcaatggtaacgaggccgatgAAGAGTAG 2718 0.3959 MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYSLERVWAIGYLKGSRRVVIGYDEGTIMVKLGREEPVASMDNSGKIIWAKHNEIQTVNIRSVGADVEIADGERLPLAVKELGTCDLYPQSLRHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDGEYAVRESTSKVKIFSKNFQEKKSIRPTFSAERIFGGTVLAMCSNDFICFYDWVECRLIRRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVASYLDSGSPVDEQGVEDAFELLHEMNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSKVYLMDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVAHFLESRGMIEDALEVATDPDYRFDLAIQLGRLEVAKGIATEVHSESKWKQLGELAMSTGKLEMAEECLKQAMDLSGLLLLYSSLGDAEGISKLATLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLSKVNPKAAESLADPEEYPNLFDDWQVALAVESKATETRGIYSPASEYVKQADKSHITLVEAFRNMQIEEGDQPLENGDSNHELTEQNGEEHYTEEQNGEGSQEEAVVVDADSTDGAVLVNGNEADEE 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01898 905 PANTHER COATOMER SUBUNIT BETA' 1 871 - -
Gma08g01898 905 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 138 172 - -
Gma08g01898 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 180 IPR001680 GO:0005515
Gma08g01898 905 Pfam WD domain, G-beta repeat 91 127 IPR001680 GO:0005515
Gma08g01898 905 Pfam WD domain, G-beta repeat 177 215 IPR001680 GO:0005515
Gma08g01898 905 Pfam WD domain, G-beta repeat 134 171 IPR001680 GO:0005515
Gma08g01898 905 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Gma08g01898 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
Gma08g01898 905 PIRSF Beta'-COP 2 889 IPR016453 -
Gma08g01898 905 PANTHER COATOMER 1 871 - -
Gma08g01898 905 SUPERFAMILY WD40 repeat-like 227 494 IPR036322 GO:0005515
Gma08g01898 905 SMART WD40_4 46 85 IPR001680 GO:0005515
Gma08g01898 905 SMART WD40_4 218 257 IPR001680 GO:0005515
Gma08g01898 905 SMART WD40_4 131 171 IPR001680 GO:0005515
Gma08g01898 905 SMART WD40_4 4 43 IPR001680 GO:0005515
Gma08g01898 905 SMART WD40_4 88 127 IPR001680 GO:0005515
Gma08g01898 905 SMART WD40_4 174 215 IPR001680 GO:0005515
Gma08g01898 905 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Gma08g01898 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 224 IPR001680 GO:0005515
Gma08g01898 905 Gene3D - 11 300 IPR015943 GO:0005515
Gma08g01898 905 Gene3D - 590 798 - -
Gma08g01898 905 MobiDBLite consensus disorder prediction 852 876 - -
Gma08g01898 905 CDD WD40 17 297 - -
Gma08g01898 905 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 218 - -
Gma08g01898 905 Pfam Coatomer WD associated region 319 763 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Gma08g01898 905 SUPERFAMILY WD40 repeat-like 3 297 IPR036322 GO:0005515
Gma08g01898 905 PRINTS G protein beta WD-40 repeat signature 158 172 IPR020472 -
Gma08g01898 905 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Gma08g01898 905 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Gma08g01898 905 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Gma08g01898 905 MobiDBLite consensus disorder prediction 848 905 - -
Gma08g01898 905 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01898 Gma-Chr8 17044367 17054102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g01898 51 309 Miscellaneous Gene Families AT5G08390 24.906 4.17e-19 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01898 K17302 - gmx:100818132 1828.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma08g01898 08 17044367 17054102 Gma08g01898 08 17044367 17054102 ECH
Gma07g00325 07 2792316 2804604 Gma08g01898 08 17044367 17054102 GST
Gma13g03221 13 46295112 46304567 Gma08g01898 08 17044367 17054102 PCT
Gma15g00133 15 1118249 1132111 Gma08g01898 08 17044367 17054102 PCT
Gma08g01898 08 17044367 17054102 Gma13g03221 13 46295112 46304567 PCT
Gma08g01898 08 17044367 17054102 Gma15g00133 15 1118249 1132111 PCT