Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g01233 ATGGGTGGTGGGGGGAGAGGAGGCAGATCCCGAACTCAGAGAAAGCACTTCCGGCAGAGCAGAGATAACGTGTGGAAGCGTTCCAAATCGGATCCCAATCCTTCTTCCAACGAAAACAATCCCCCGTGGACTCCCTTCGCCACTGAGAACGCCGCTTTCGATTTCTACTACAAAGAGCAGGGGATAGTGGACCCGCAACACTGGGACCAATTCGTCGCAGTTCTCAGAACTCCATTGCCCGCAACCTTCAGAATCAACTCTAGTAGCCAGTTTTcCGACGACCTTCGTTCTCAATTGGAGAATGACTTCCTGCATTCTCTTCGCGACGAGGTTGTTGAAGGAGGTGAGACGGAGGCTATTCGGCCGTTGCTGTGGTACCCTGGGAACTTCGCTTGGCATTCTAATTTTTCCAGGATGCAGCTCAGGAAGAACCAAACACTTGAGAGGTTCCATGAATTCTTAAAGCTAGAAAATGAGATTGGAAATATCACAAGACAGGAAGCTGTCAGTATGGTTCCTCCCCTCTTCTTGGATGTGCATTCAGATCATTTTGTGCTTGATATGTGTGCTGCACCAGGTTCAAAAACATTCCAATTGCTTGAGATTATACACCAATCATCTAAAACAAGATCACTACCTGATGGAATGGTTATAGCAAATGATCTCGATGTCCAAAGATGTAATCTTCTCATCCACCAAACAAAAAGAATGTGCACAGCCAACCTAATTGTTACAAATCACGAAGCTCAGCACTTCCCAGGATGCCGTTTAAACAGGAATTATGAAAGGATGGAGTTAGATAACAATATTAGCCAACTGTTATTTGATCGTGTTCTATGTGATGTCCCATGCAGTGGAGATGGTACCCTTCGTAAGGCACCTGATCTATGGAGGAAATGGAACACAGGGATGGGACATGGCCTTCACAGCCTACAGGTTTTAATTGCTATGCGAGGTTTATCTCTACTTAAAATTGGTGGAAGAATGGTCTATTCAACATGCTCAATGAATCCTATTGAGAATGAAGCTGTGGTTGCTGAGGTTTTGCGAAGGTGTGGAGGGTCTGTTAAACTTCTTGATGTCTCTAGTGAGCTTCCACAACTTATTCGTCGGCCAGGTCTCAGGAGATGGAAGGTATATGACAAGGGCACTTGGTTGGTCTCTTACAAAGATGTTCCTAAGTATCGTAGAAGTGTAATTCTTTCCAGTATGTTTCCTTCTGGCAGAGGCCATCATGATCTTGTGGATAGTAGTTGTAGTGTTGATCCAGAGGGCGTTACTAATGGTATTAATGGAAATGCTGGAGATGGTGTTCAAGCAGTTGAGAATCCTGTGATGTCCGAGTCTGGTGCGGAAGTTTGCGATTTCCCTCTAGAGCGTTGCATGAGGATAGTGCCTCATGATCAGAACACTGGAGCCTTCTTCATTGCTGTACTGCAAAAAGTTTCTCCTCTGCCAGCAATTACAGAACAAACAAAAATAAAAAATGATGAGCAATATGTAGAACCCGCAAACCAGAGTCTTAATGATGCACAAGTACCACATATTACTTCATCAGAAAGTGCACACGAAGAAGTCTTCAAAGCAGTGTCTGAGGAAAATGTAGATGACGCTGAACCCAACACTGAAGATTTGGAAGTTGGTCCTGTTACATGTGAAGAACAGAATTCCAAGGAAACTCAAGAACCTGATAATGTACAAAACACAGCAAAGAGGGTTCCAGGCAAAAGAAAGCTACAAATTCAAGGCAAATGGAGGGGTGTTGACCCTGTTGTCTTTTTCAAAGATGAAACAATTATTAATAGTATAAGGGATTTCTATGGAATTGATGAGCGTTTTCCATTCAATGGTCACCTTGTTACAAGAAACAGTGATACAAATCATGTGAAAAGAATTTATTATATCTCCAAGTCAGTCAAGGATGTTCTTGAGTTGAACTTCAAAGTTGGGCAGCAACTTAAAATAACATCAATTGGCCTGAAGATGTTTGAAAGACAAACAGCGCGAGAAGGTAGCTCTGCATCATGTGCTTTCCGGATATCATCCGAAGGATTGCCCCTTATTCTCCCATACATAACCAAACAGATTCTGCATGCATCTCCTGCAGACTTCAAGCATATTCTGCAGAACAAAGAAGTAAAATTTGAAGATTTTAATGATGCTGAGTTTGGTGAAAAGGCAGCAAACCTATTGCCAGGCTGTTGTGTGGTAATTCTGCATATAGGGAACACACTTGCTGCAGAGTCTCTCCAAGTGGATGAGTCAACGATAGCCATTGGATGCTGGAAGGGTAGGGCGAGATTGTCAGTGATGGTTACTGCAATGGACTGCCAAGAACTACTTGAAAGGCTTTTAATACGGTTTGACACTGAAAAGGGTTCCTCTGGGCATGCAGACAAATCCTCTAATGATGTGCAAGAGTTGAACAGTATAAATGATGGCGTGAAAGTTACTGTGAGTTAA 2463 0.4312 MGGGGRGGRSRTQRKHFRQSRDNVWKRSKSDPNPSSNENNPPWTPFATENAAFDFYYKEQGIVDPQHWDQFVAVLRTPLPATFRINSSSQFSDDLRSQLENDFLHSLRDEVVEGGETEAIRPLLWYPGNFAWHSNFSRMQLRKNQTLERFHEFLKLENEIGNITRQEAVSMVPPLFLDVHSDHFVLDMCAAPGSKTFQLLEIIHQSSKTRSLPDGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRLNRNYERMELDNNISQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNTGMGHGLHSLQVLIAMRGLSLLKIGGRMVYSTCSMNPIENEAVVAEVLRRCGGSVKLLDVSSELPQLIRRPGLRRWKVYDKGTWLVSYKDVPKYRRSVILSSMFPSGRGHHDLVDSSCSVDPEGVTNGINGNAGDGVQAVENPVMSESGAEVCDFPLERCMRIVPHDQNTGAFFIAVLQKVSPLPAITEQTKIKNDEQYVEPANQSLNDAQVPHITSSESAHEEVFKAVSEENVDDAEPNTEDLEVGPVTCEEQNSKETQEPDNVQNTAKRVPGKRKLQIQGKWRGVDPVVFFKDETIINSIRDFYGIDERFPFNGHLVTRNSDTNHVKRIYYISKSVKDVLELNFKVGQQLKITSIGLKMFERQTAREGSSASCAFRISSEGLPLILPYITKQILHASPADFKHILQNKEVKFEDFNDAEFGEKAANLLPGCCVVILHIGNTLAAESLQVDESTIAIGCWKGRARLSVMVTAMDCQELLERLLIRFDTEKGSSGHADKSSNDVQELNSINDGVKVTVS 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g01233 820 MobiDBLite consensus disorder prediction 553 568 - -
Gma08g01233 820 PRINTS RNA (C5-cytosine) methyltransferase signature 186 196 IPR023267 GO:0001510
Gma08g01233 820 PRINTS RNA (C5-cytosine) methyltransferase signature 276 288 IPR023267 GO:0001510
Gma08g01233 820 PRINTS RNA (C5-cytosine) methyltransferase signature 326 342 IPR023267 GO:0001510
Gma08g01233 820 PRINTS RNA (C5-cytosine) methyltransferase signature 464 481 IPR023267 GO:0001510
Gma08g01233 820 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 71 482 IPR001678 GO:0008168
Gma08g01233 820 MobiDBLite consensus disorder prediction 29 44 - -
Gma08g01233 820 ProSitePatterns NOL1/NOP2/sun family signature. 275 286 IPR018314 GO:0003723|GO:0008168
Gma08g01233 820 PANTHER TRNA (CYTOSINE(34)-C(5))-METHYLTRANSFERASE-RELATED 5 797 - -
Gma08g01233 820 MobiDBLite consensus disorder prediction 552 575 - -
Gma08g01233 820 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 132 153 IPR023270 GO:0016428
Gma08g01233 820 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 360 379 IPR023270 GO:0016428
Gma08g01233 820 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 653 665 IPR023270 GO:0016428
Gma08g01233 820 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 53 482 IPR029063 -
Gma08g01233 820 Pfam 16S rRNA methyltransferase RsmB/F 176 352 IPR001678 GO:0008168
Gma08g01233 820 Gene3D Vaccinia Virus protein VP39 50 481 IPR029063 -
Gma08g01233 820 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 5 797 IPR023267 GO:0001510
Gma08g01233 820 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g01233 Gma-Chr8 10488099 10494987 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g01233 K15334 - gmx:100808859 1643.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01746 05 39115025 39123137 Gma08g01233 08 10488099 10494987 GST
Gma08g01233 08 10488099 10494987 Gma18g00143 18 1132537 1136806 PCT
Gma08g01233 08 10488099 10494987 Gma11g02430 11 39655151 39661802 PCT