Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01746 ATGGGTGGTGGCGGGAGAGGAGGCAGATCACGCACTCAGAGAAAACACTTCCGCCAGAGCAGAGAGAACGTGTGGAAGCGTTCCAAATCGGATCCCGATCCTTCTTCAACCGAAAACAATCCCGCGTGGACTCCCTTCGCCACTGAGAACGCCGCTTTTGATTTCTACTACAAAGAGCAGGGAATAGTGGACCTGCAATACTGGGACCAATTCGTCCCACTTCTCAGAACTCCATTGCCCGCAACCTTCAGAATCAACTCTAGTAGCCGGTTCTACGACGACCTTCGTTCTCAATTGGAGAATGACTTCGTGCATTCTCTTCGCGATGAGGTTGTTGAAGGAGGTGAAACGGAGGCTATTCGGCCGTTGCTGTGGTACCCTGGGAACTTCGCTTGGCATTCAAATTTTTCTCGGATGCAGCTCAGGAAGAACCAAACGCTTGAGAGGTTCCATGAATTCTTAAAACTAGAAAATGAGATTGGAAATATCACAAGACAGGAAGCTGTCAGTATGGTTCCTCCCCTCTTCTTGGATGTGCATTCAGATCATTTTGTGCTTGATATGTGTGCTGCACCAGGTTCAAAAACGTTCCAATTGCTTGAGATTATACACCAATCATCTAAAGCAGGATCACTACCTGATGGAATGGTTATAGCAAATGATCTTGATGTCCAAAGATGTAATCTTCTGATCCACCAAACAAAAAGAATGTGCACAGCCAACCTAATTGTTACAAATCACGAAGCTCAGCACTTCCCAGGATGCCGTTTAAACAGGAATTATGAAAGGATGGAGTTAGATCACGATATTGGCCAACTGTTATTTGATCGTGTTCTGTGTGATGTCCCATGCAGTGGAGATGGTACCCTTCGTAAGGCACCTGATCTCTGGAGGAAATGGAACACAGGGATGGGACATGGCCTTCACAGCCTACAAGTTTTAATTGCTATGCGAGGTTTATCTCTACTTAAAATTGCTGTGGTTGCTGAGGTTTTGCGGAGGTGTGGAGGGTCTGTCAAACTTGTTGATGTTTCTAGTGAGCTTTCACAACTTATTCGTCAGCCAGGTCTCAAGAGATGGAAGATATATGACAAGGGCACTTGGTTGGTCTCTTATAAAGATGTTCCTAAGTATCGTAGAAGTGTAATTCTTTCCAGTATGTTTCCTTCTGGCAGAGGTCATCATGATCTTGTTGATAGTAGTTGTAGTGTTGACCCAGAGGGCATTACTAATGGTATTAACGGAAATGCTGGAGATGGTGTTCAAGCAGCAGAGAATCCTGTGATGTCCGAGTCTGCCGCGGAAGTTTGTGATTTCCCTCTAGAGCATTGCATGAGGATACTGCCTCATGATCAGAACACTGGAGCCTTCTTCATTGCTGTACTGCAAAAAGTTTCTCCTCTGCCAGCAATTACAGAACAAACCAAAAAAAAGATTGACGAGCAATATGTAGAACAATCAAACCAGAGTCTTAATGATGCACAAGTACCACAGATTACTTCACCAGAAAGTACACATGAAGAAGTCTTGAATGCTGTGTCAGAGGAAAATGTAGATGACAATGAACCCATTACCGAAGATTTGGAAGTTGGTCCTGTTACATGTGAAGAACAGAATTCCAAGGAAACTCGAGAGCCCGATAATGTACAAAACACAACAAAGAGGGTTCCAGGTAAAAGAAAGCTACAAATTCAAGGCAAATGGAGGGGTGTTGACCCTGTTGTTTTTTTCAAAGATGAAACAATTATTAATAGTATAAAGGATTTCTATGGAATTGATGAGCGTTTTCCTTTCAACGGTCACCTTGTTACAAGAAACAGTGATACAAATCATGTGAAAAGAATTTATTATATCTCCAAGTCAGTCAAGGATGTTCTTGAGTTGAACTTCAAAGTTGGGCAGCAACTTAAAATAACATCAATTGGCATGAAGATGTTTGAAAGACAAACAGCGCGAGAAGGTAGCTCTGCACCATGTGCTTTCCGGATATCATCTGAAGGATTGCCCCTTATTCTCCCATACATAACCAAACAGATTCTGCATGCATCTCCCTCAGACTTCAAGCATCTTCTGCAGAACAAAGAAGTAAAGTTTGAAGATTTTACTGATGCCGAGTTTGGTGAAAAGGCAGCAAACCTATTGCCAGGCTGTTGTGTGGTAATTATGTGTATAGGGAAAACAGTTGTTGCAGAGTCTCTCCAAGTGGATGAGTCAACGATAGCCATTGGATGCTGGAAGGGTAGGGCGAGATTGTCAGTGATGGTTACTGCAATGGACTGCCAAGAACTACTGGAAAGGCTTTTAATACGTTTTGACACTGAAAAGGGCTCCTCTGGGCATTTGGACAATTCCTCTAATGATGTGGAAGAAGTTCAGCCTGTGCAAGAGTTGAACAGGAAAAATGATGACGATGATGTGAAAGCTACTGAGTTAAAGTGA 2439 0.4313 MGGGGRGGRSRTQRKHFRQSRENVWKRSKSDPDPSSTENNPAWTPFATENAAFDFYYKEQGIVDLQYWDQFVPLLRTPLPATFRINSSSRFYDDLRSQLENDFVHSLRDEVVEGGETEAIRPLLWYPGNFAWHSNFSRMQLRKNQTLERFHEFLKLENEIGNITRQEAVSMVPPLFLDVHSDHFVLDMCAAPGSKTFQLLEIIHQSSKAGSLPDGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRLNRNYERMELDHDIGQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNTGMGHGLHSLQVLIAMRGLSLLKIAVVAEVLRRCGGSVKLVDVSSELSQLIRQPGLKRWKIYDKGTWLVSYKDVPKYRRSVILSSMFPSGRGHHDLVDSSCSVDPEGITNGINGNAGDGVQAAENPVMSESAAEVCDFPLEHCMRILPHDQNTGAFFIAVLQKVSPLPAITEQTKKKIDEQYVEQSNQSLNDAQVPQITSPESTHEEVLNAVSEENVDDNEPITEDLEVGPVTCEEQNSKETREPDNVQNTTKRVPGKRKLQIQGKWRGVDPVVFFKDETIINSIKDFYGIDERFPFNGHLVTRNSDTNHVKRIYYISKSVKDVLELNFKVGQQLKITSIGMKMFERQTAREGSSAPCAFRISSEGLPLILPYITKQILHASPSDFKHLLQNKEVKFEDFTDAEFGEKAANLLPGCCVVIMCIGKTVVAESLQVDESTIAIGCWKGRARLSVMVTAMDCQELLERLLIRFDTEKGSSGHLDNSSNDVEEVQPVQELNRKNDDDDVKATELK 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01746 812 PRINTS RNA (C5-cytosine) methyltransferase signature 276 288 IPR023267 GO:0001510
Gma05g01746 812 PRINTS RNA (C5-cytosine) methyltransferase signature 186 196 IPR023267 GO:0001510
Gma05g01746 812 PRINTS RNA (C5-cytosine) methyltransferase signature 447 464 IPR023267 GO:0001510
Gma05g01746 812 MobiDBLite consensus disorder prediction 793 812 - -
Gma05g01746 812 MobiDBLite consensus disorder prediction 1 43 - -
Gma05g01746 812 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 56 465 IPR029063 -
Gma05g01746 812 ProSitePatterns NOL1/NOP2/sun family signature. 275 286 IPR018314 GO:0003723|GO:0008168
Gma05g01746 812 MobiDBLite consensus disorder prediction 537 558 - -
Gma05g01746 812 Pfam 16S rRNA methyltransferase RsmB/F 176 304 IPR001678 GO:0008168
Gma05g01746 812 MobiDBLite consensus disorder prediction 776 812 - -
Gma05g01746 812 Gene3D Vaccinia Virus protein VP39 51 464 IPR029063 -
Gma05g01746 812 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 132 153 IPR023270 GO:0016428
Gma05g01746 812 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 636 648 IPR023270 GO:0016428
Gma05g01746 812 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 343 362 IPR023270 GO:0016428
Gma05g01746 812 PANTHER TRNA (CYTOSINE(34)-C(5))-METHYLTRANSFERASE-RELATED 5 779 - -
Gma05g01746 812 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 71 465 IPR001678 GO:0008168
Gma05g01746 812 MobiDBLite consensus disorder prediction 17 33 - -
Gma05g01746 812 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 5 779 IPR023267 GO:0001510
Gma05g01746 812 MobiDBLite consensus disorder prediction 778 792 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01746 Gma-Chr5 39115025 39123137 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01746 K15334 - gmx:100808859 1488.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01746 05 39115025 39123137 Gma08g01233 08 10488099 10494987 GST
Gma05g01746 05 39115025 39123137 Gma18g00143 18 1132537 1136806 PCT
Gma05g01746 05 39115025 39123137 Gma11g02430 11 39655151 39661802 PCT