Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma08g00049 ATGGCTGAGGAGACTCCAAACCAGACAACCACACCACCCCCTCCTCAAGAGTCAGTGGTGCAAGTGGAGGAAGTGGTGGTAACCGATGTTCCACAGCCCGACAAAACAACAACTACAGTTCCAGTTGAAAGAGATTCGCAACCTCAACCTTATGAGCCAGAGAAGAAGAAGCCCGTTGAGGAAACCGTCACTCTCGAGACTCACCTCTCCAAACCCAACAATGCTGACCACACCAACAACATCCCTGAATTCATTGAAGAAAGCACCAAACTTTCTGACCTCCCAGAAAACGAAAACAAGGCTCTCCAAGAGCTCAAGAAGCTCGTTCAAGACGCTCTCAACAATCACCACTTCTCTTCCAAACATGATAACAAGAAGCCACCACAAACAACTGCTGCTGACAACAAGGAAGAACAACAACCACAAGAAGTTGTAACTGAAACTAAACCTGATGCTGCCCCAGCAAAAACCGAAGAGGAGCATGTTGAAACaaagaaggaagaggaaaaggaggaagaagaaaaggagCAAGTGACAGAAACGAAGGAAGAAGAAGCTGCGGTGGATGATGATGGAGCAAAAACTGTGGAGGCCATTGAAGAGACCGTTGTTGCTGTTTCTTCTACCGTTCAGCCTCAAGCTGAAGAGAAAGCTTCAGAACCAGAAGCCACCAAAGAAGAATCTTCACCGCCACTTCCACCTGAAGAGGCTTCCATTTGGGGGATACCGCTGCTTGCAGACGAGAGGAGCGATGTGATTCTGCTTAAGTTTCTGCGCGCGAGAGAGTTCAAGGTGAAGGAGGCATTCACCATGCTGAAGAACACGATCCAGTGGAGGAAGGAGTTTGGGATGGAGGAGCTGATGGAAGAGAAGCTCGGGGATGAGTTGGAGAAGGTGGTGTTCATGCACGGCTTTGACAAGGAGGGTCACCCTGTGTGTTACAACATATATGAGGAGTTCCAGAACAAGGAGTTGTACAAGAAGACTTTTTCTGATGAGGAGAAGAGGGAGAAGTTCCTGAGGTGGAGAATTCAGTTCCTGGAGAAGAGTATAAGGAAGCTTGATTTCAACCCTGGTGGCATATGCACCATTGTTCATGTTAATGACCTCAAGAACTCTCCTGGACTTGCCAAGTGGGAACTTAGACAAGCCACCAAACATGCCCTACAATTGCTTCAAGACAATTACCCTGAATTTGTTGCCAAACAGGTTTTTATTAATGTGCCTTGGTGGTACCTGGCAGTGAATAGGATGATAAGCCCTTTTCTTACTCAGAGGACTAAAAGCAAGTTTGTCTTTGCTGGGCCTTCCAAATCAACGGAAACCCTTTTGAGATATATAGCTCCGGAGCAGCTTCCGGTGAAGTACGGTGGACTAGGCAAAGATGGGGAGTTCGGAAATACCGATGCTGTCACAGAAATCACAGTGAGGCCGGCAGCAAAACATACTGTGGAATTTTCAGTTACTGAGAACTGCTTACTCTCTTGGGAGCTCAGAGTAATAGGATGGGAAGTAAGTTATGGCGCAGAATTTGTGCCAAGCTCAGAAGGAAGCTACACAGTAATTGTCCAGAAGGCTAGGAAGGTTGCTTCATCAGAAGAACCAGTTCTTTGCAACAGTTTTAAGGTTGGTGAACCTGGGAAAGTTGTTCTCACTATTGACAACACAAGCTCTAAGAAGAAGAAGCTATTGTACCGCTTGAAGACCAAGCCTTCCCTCTCTGACTAA 1728 0.4583 MAEETPNQTTTPPPPQESVVQVEEVVVTDVPQPDKTTTTVPVERDSQPQPYEPEKKKPVEETVTLETHLSKPNNADHTNNIPEFIEESTKLSDLPENENKALQELKKLVQDALNNHHFSSKHDNKKPPQTTAADNKEEQQPQEVVTETKPDAAPAKTEEEHVETKKEEEKEEEEKEQVTETKEEEAAVDDDGAKTVEAIEETVVAVSSTVQPQAEEKASEPEATKEESSPPLPPEEASIWGIPLLADERSDVILLKFLRAREFKVKEAFTMLKNTIQWRKEFGMEELMEEKLGDELEKVVFMHGFDKEGHPVCYNIYEEFQNKELYKKTFSDEEKREKFLRWRIQFLEKSIRKLDFNPGGICTIVHVNDLKNSPGLAKWELRQATKHALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSTETLLRYIAPEQLPVKYGGLGKDGEFGNTDAVTEITVRPAAKHTVEFSVTENCLLSWELRVIGWEVSYGAEFVPSSEGSYTVIVQKARKVASSEEPVLCNSFKVGEPGKVVLTIDNTSSKKKKLLYRLKTKPSLSD 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma08g00049 575 MobiDBLite consensus disorder prediction 28 236 - -
Gma08g00049 575 MobiDBLite consensus disorder prediction 116 132 - -
Gma08g00049 575 MobiDBLite consensus disorder prediction 66 86 - -
Gma08g00049 575 SUPERFAMILY CRAL/TRIO N-terminal domain 91 290 IPR036273 -
Gma08g00049 575 SMART CRAL_TRIO_N_2 250 275 IPR011074 -
Gma08g00049 575 MobiDBLite consensus disorder prediction 31 45 - -
Gma08g00049 575 CDD SEC14 295 459 IPR001251 -
Gma08g00049 575 Gene3D GOLD domain 475 569 - -
Gma08g00049 575 ProSiteProfiles GOLD domain profile. 468 569 IPR009038 -
Gma08g00049 575 MobiDBLite consensus disorder prediction 89 105 - -
Gma08g00049 575 MobiDBLite consensus disorder prediction 48 64 - -
Gma08g00049 575 PRINTS Cellular retinaldehyde-binding protein signature 253 275 - -
Gma08g00049 575 PRINTS Cellular retinaldehyde-binding protein signature 416 435 - -
Gma08g00049 575 MobiDBLite consensus disorder prediction 1 20 - -
Gma08g00049 575 SMART sec14_4 294 461 IPR001251 -
Gma08g00049 575 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 470 568 IPR036598 -
Gma08g00049 575 Pfam CRAL/TRIO domain 298 458 IPR001251 -
Gma08g00049 575 PANTHER PATELLIN-1 1 575 IPR044834 GO:0008289
Gma08g00049 575 Coils Coil 155 185 - -
Gma08g00049 575 Gene3D - 213 281 - -
Gma08g00049 575 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 289 464 IPR001251 -
Gma08g00049 575 Gene3D - 284 474 IPR036865 -
Gma08g00049 575 MobiDBLite consensus disorder prediction 152 197 - -
Gma08g00049 575 Pfam CRAL/TRIO, N-terminal domain 235 274 IPR011074 -
Gma08g00049 575 PANTHER PATELLIN-3 PROTEIN 1 575 - -
Gma08g00049 575 SUPERFAMILY CRAL/TRIO domain 299 461 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma08g00049 Gma-Chr8 421707 425152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma08g00049 254 453 Acyl Lipid Metabolism Gene Families AT1G55840 26.636 9.93e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma08g00049 - - gmx:100788197 997.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01942 05 40818399 40821338 Gma08g00049 08 421707 425152 GST
Gma08g00049 08 421707 425152 Gma04g01986 04 50305939 50309774 PCT
Gma08g00049 08 421707 425152 Gma06g01427 06 13564534 13568407 PCT
Gma04g01986 04 50305939 50309774 Gma08g00049 08 421707 425152 PCT
Gma06g01427 06 13564534 13568407 Gma08g00049 08 421707 425152 PCT