Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01942 ATGGCCGAGGAAGCTCCAAACCAGACAACCACACCACCACCTCCTCAAGAGTCAGTGGTGCAAGTGGAGGAAGTGGTAGTAACCGATGTTCCACAGCCACCAGAAAAAACAACAACCACTGTTCCAGTTGAAAGTGATTCACAACCTGAACCCGAGGAGCCCGTGAAGAAGCCCGTTGAAGAAACCGTCACTCTCGAGACTCACCTCTCCAAACCCAATAATGCTGACGACAACGACAACATCATCCCTGAATTCAAGGAAGAAAGCACCAAACTCTCTGAACTCCCAGAAAACGAAAACAAGGCACTCCAAGACCTCAAGAAGCTCGTTCAAGACGCTCTCAACAACCACCACTTCTCTTCCAAAGAAGATAATAAGAACCCACCACCACAAACTGCTGCTCACAAGGAAGAAGTTGTAACTGAAACTAAAACTGATGCTGCCCCAGCAAAAACCGAAGAGGAGCAAGCTGAAACAAAGGAGGAAGAGGAAAAGAAGGAGGAAGTGAAAGAAACGAATGAAGAAGCTGCGGTGGATGATGATGGAGCAAAAACTGTGGAGGCCATTGAAGAGACCGTTGTTGCTGTCTCTTCTACCGTTCAGCCTCAAGCTGAAGAGAAAGCTTCATCGCCACTTCCACCTGAAGAGGTTTCCATTTGGGGGATACCGCTGCTTGCAGATGAGAGGAGCGATGTGATTCTGCTGAAGTTTCTGCGCGCGAGGGAGTTTAGGGTGAAGGAGGCATTCACCATGCTGAAGAACACGATCCAGTGGAGGAAGGAGTTTGGGATGGAGGAGTTGATGGAGGAGAAGCTCGGGGATGAGTTGGAGAAGGTGGTGTTCATGCATGGCTTTGACAAGGAGGGTCACCCTGTGTGTTACAACATCTATGGGGAGTTCCAGAACAAGGAGTTGTACAAGAAGACTTTTTCTGATGAGGAGAAGAGGGAGAAGTTCCTGAGGTGGAGAATTCAGTTCCTGGAGAAGAGTATAAGGAAGCTGGATTTCAACCCTGGTGGCATATGCACCATTGTTCATGTTAATGACCTCAAGAATTCCCCTGGACTTGCCAAGTGGGAACTTAGACAAGCCACCAAACATGCCCTACAATTGCTTCAAGACAATTACCCTGAATTTGTTGCCAAACAGGTGTTTATTAATGTGCCATGGTGGTACCTGGCAGTGAATAGGATGATAAGCCCTTTTCTTACTCAGAGGACCAAAAGCAAGTTTGTCTTTGCTGGGCCTTCCAAATCAACGGAAACCCTTTTGAGATACATAGCTCCGGAGCAGCTTCCCGTGAAGTACGGTGGACTAAGCAAAGATGGGGAGTTCGGAAATATCGATGCTGTCACAGAAATCACAGTGAGGCCGGCAGCAAAACATACAGTGGAATTTTCAGTTACTGAGAACTGCTTACTCTCTTGGGAGCTTAGAGTAATAGGTTGGGAAGTAACTTATGGGGCAGAATTTGTGCCAAGCTCAGAAGGAAGCTACACAGTAATTGTCCAGAAGGCTAGAAAGGTTGCTTCATCAGAAGAACCAGTGCTTTGCAACAGTTTTAAGGTTGGTGAACCTGGGAAAGTTGTTCTCACCATTGACAACACAAGCTCTAAGAAGAAGAAGCTCTTGTATCGCTTGAAGACCAAGCCTTCCCCTTCTGACTAA 1668 0.4712 MAEEAPNQTTTPPPPQESVVQVEEVVVTDVPQPPEKTTTTVPVESDSQPEPEEPVKKPVEETVTLETHLSKPNNADDNDNIIPEFKEESTKLSELPENENKALQDLKKLVQDALNNHHFSSKEDNKNPPPQTAAHKEEVVTETKTDAAPAKTEEEQAETKEEEEKKEEVKETNEEAAVDDDGAKTVEAIEETVVAVSSTVQPQAEEKASSPLPPEEVSIWGIPLLADERSDVILLKFLRAREFRVKEAFTMLKNTIQWRKEFGMEELMEEKLGDELEKVVFMHGFDKEGHPVCYNIYGEFQNKELYKKTFSDEEKREKFLRWRIQFLEKSIRKLDFNPGGICTIVHVNDLKNSPGLAKWELRQATKHALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSTETLLRYIAPEQLPVKYGGLSKDGEFGNIDAVTEITVRPAAKHTVEFSVTENCLLSWELRVIGWEVTYGAEFVPSSEGSYTVIVQKARKVASSEEPVLCNSFKVGEPGKVVLTIDNTSSKKKKLLYRLKTKPSPSD 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01942 555 MobiDBLite consensus disorder prediction 28 182 - -
Gma05g01942 555 Pfam CRAL/TRIO domain 278 438 IPR001251 -
Gma05g01942 555 PRINTS Cellular retinaldehyde-binding protein signature 233 255 - -
Gma05g01942 555 PRINTS Cellular retinaldehyde-binding protein signature 396 415 - -
Gma05g01942 555 MobiDBLite consensus disorder prediction 80 106 - -
Gma05g01942 555 MobiDBLite consensus disorder prediction 1 20 - -
Gma05g01942 555 MobiDBLite consensus disorder prediction 49 64 - -
Gma05g01942 555 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 269 444 IPR001251 -
Gma05g01942 555 MobiDBLite consensus disorder prediction 32 46 - -
Gma05g01942 555 Pfam CRAL/TRIO, N-terminal domain 214 254 IPR011074 -
Gma05g01942 555 Gene3D GOLD domain 448 550 - -
Gma05g01942 555 PANTHER PATELLIN-3 PROTEIN 1 555 - -
Gma05g01942 555 CDD SEC14 275 439 IPR001251 -
Gma05g01942 555 SUPERFAMILY CRAL/TRIO domain 279 441 IPR036865 -
Gma05g01942 555 Coils Coil 150 179 - -
Gma05g01942 555 MobiDBLite consensus disorder prediction 137 182 - -
Gma05g01942 555 Gene3D - 263 447 IPR036865 -
Gma05g01942 555 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 451 548 IPR036598 -
Gma05g01942 555 SUPERFAMILY CRAL/TRIO N-terminal domain 91 270 IPR036273 -
Gma05g01942 555 SMART CRAL_TRIO_N_2 230 255 IPR011074 -
Gma05g01942 555 SMART sec14_4 274 441 IPR001251 -
Gma05g01942 555 Gene3D - 152 261 - -
Gma05g01942 555 ProSiteProfiles GOLD domain profile. 420 549 IPR009038 -
Gma05g01942 555 PANTHER PATELLIN-1 1 555 IPR044834 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01942 Gma-Chr5 40818399 40821338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01942 234 433 Acyl Lipid Metabolism Gene Families AT1G55840 27.488 2.72e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01942 - - gmx:100804544 935.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01942 05 40818399 40821338 Gma05g01942 05 40818399 40821338 ECH
Gma05g01942 05 40818399 40821338 Gma08g00049 08 421707 425152 GST
Gma05g01942 05 40818399 40821338 Gma04g01986 04 50305939 50309774 PCT
Gma05g01942 05 40818399 40821338 Gma06g01427 06 13564534 13568407 PCT
Gma04g01986 04 50305939 50309774 Gma05g01942 05 40818399 40821338 PCT
Gma06g01427 06 13564534 13568407 Gma05g01942 05 40818399 40821338 PCT