Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01427 ATGGCCGAGGAAGTTCCAAAGACCAGCACAACTCCAGAGGAGGTGGTGGTCTCTGACGTGGCACCTGCTGACGAGAAACCAGACACCACCACCGACGTTGTTGTTCCCGTAGAGAAAGACGCACAACAAGAACAAGAAACCTCGCCAGAGAAGGAGAAAGAGAACGTTCCCGAAACAGCTGAAACCGAGTCCGAGGTTGTTTCAAAACCAAGCGGTGACGACAACGTTCCTGAATCCGGTTCTTTCAAGGAGGAAAGCACCATTGTTTCCGACCTACCTGAAACCGAGAAAAAGGCTCTGCAAGAACTCAAACAACTCATTCAAGAAGCGCTCAACAACCACGAGTTATCCGAGGTACCTACAACTAACCCTCCCAAAGATGAAAAACCCGAACACAAGGAAGAACAGAAACCCGTGGAGGAAGAAAAGAAGGAACATGCTGCTGACGTGGCAGAAGAGACAGAAAAAGAAGCTGCAGAAGTTACGGTAACCGAAACTGAGGTTGTTGAAGAGAAAGTGGCGGTTTCTGCTTCTGCTGACGAGGATGGAGCGAAAACCGTTGAAGCCATCGAAGAAAGCGTTGTGTCTGTGACAGTGACTGTCTCCGAGGAACCAAAGGTGGAAGCTGTTTCACTTTCTGCTTCTCCCGAAGAGGTTTGCATTTGGGGTGTGCCGCTTCTCGCTGATGACAGAAGCGACGTGATTCTGTTGAAGTTTCTTCGTGCTCGGGACTTCAAGGTGAAGGAGGCATTGGCGATGATAAAGAGCACGATTCGGTGGAGGAAGGAGTTCAAGATGGAGGAGCTGTTGGAGGAGGATTTGGGTGGTGATGGTTTGGAGAAGGCGGTGTACATGCATGGGTTCGACAAGGAGGGTCACCCTGTGTGTTACAACATCTATGGTGAGTTTCAGAACAAGGAGTTGTACAAGAAGAGTTTCTCTGATGAGGAGAAGAGGTATAGGTTTCTCAGGTGGAGGATTCAGTTCCTGGAGAAGAGTATCAGGAAGCTGGATTTTAACCCTGGTGGGATATGCACCATTGTTCAGGTTAATGACCTCAGGAATTCTCCTGGCCCTTCTAAGTGGGAGCTTAGACAGGCTACCAAACAGGCCCTGCAGCTGCTTCAGGATAACTATCCTGAGTTTGTAGCCAAACAGGTGTTTATCAATGTGCCATGGTGGTACTTGGCAGTGAACAGGATGATAAGTCCCTTTCTTACTCAGAGAACCAAAAGCAAGTTTGTCTTTGCTGGACCTTCCAAATCAGCTGAGACCCTTTTGAGGTACATTGCTGCAGAGCAACTTCCGGTCAAGTATGGTGGACTAAGCAAAGATGGAGAGTTCGGAATTTCGGATGCTGTTACAGAAATTACAGTGAGGTCAGCAGCAAAACATACCGTGGAGTTTCCAGTTACTGAGAACTCGCTACTCTCTTGGGAGCTCAGAGTAATAGGGTGGGACGTGAGCTACGGTGCAGAGTTTGTGCCAACTTCAGAGGGAAGCTATACTGTGATCATCCAGAAGGCCAGAAAGGTTGCTTCATCAGAAGAACCGGTGCTTTGCAACAACTACAAAATTGGTGAACCTGGGAAAGTGGTTCTCACCATTGACAATCAAAGCTCTAAGAAGAAGAAGCTCTTGTACCGCTTGAAGGTCAAGCCTTCTTCTGACTGA 1674 0.4827 MAEEVPKTSTTPEEVVVSDVAPADEKPDTTTDVVVPVEKDAQQEQETSPEKEKENVPETAETESEVVSKPSGDDNVPESGSFKEESTIVSDLPETEKKALQELKQLIQEALNNHELSEVPTTNPPKDEKPEHKEEQKPVEEEKKEHAADVAEETEKEAAEVTVTETEVVEEKVAVSASADEDGAKTVEAIEESVVSVTVTVSEEPKVEAVSLSASPEEVCIWGVPLLADDRSDVILLKFLRARDFKVKEALAMIKSTIRWRKEFKMEELLEEDLGGDGLEKAVYMHGFDKEGHPVCYNIYGEFQNKELYKKSFSDEEKRYRFLRWRIQFLEKSIRKLDFNPGGICTIVQVNDLRNSPGPSKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKDGEFGISDAVTEITVRSAAKHTVEFPVTENSLLSWELRVIGWDVSYGAEFVPTSEGSYTVIIQKARKVASSEEPVLCNNYKIGEPGKVVLTIDNQSSKKKKLLYRLKVKPSSD 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01427 557 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 271 447 IPR001251 -
Gma06g01427 557 MobiDBLite consensus disorder prediction 89 103 - -
Gma06g01427 557 Gene3D GOLD domain 457 553 - -
Gma06g01427 557 Pfam CRAL/TRIO domain 281 441 IPR001251 -
Gma06g01427 557 ProSiteProfiles GOLD domain profile. 451 552 IPR009038 -
Gma06g01427 557 SMART CRAL_TRIO_N_2 232 257 IPR011074 -
Gma06g01427 557 PANTHER PATELLIN-1 13 556 IPR044834 GO:0008289
Gma06g01427 557 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 452 554 IPR036598 -
Gma06g01427 557 Pfam CRAL/TRIO, N-terminal domain 220 255 IPR011074 -
Gma06g01427 557 MobiDBLite consensus disorder prediction 1 164 - -
Gma06g01427 557 MobiDBLite consensus disorder prediction 121 164 - -
Gma06g01427 557 MobiDBLite consensus disorder prediction 106 120 - -
Gma06g01427 557 SUPERFAMILY CRAL/TRIO N-terminal domain 88 273 IPR036273 -
Gma06g01427 557 MobiDBLite consensus disorder prediction 43 60 - -
Gma06g01427 557 CDD SEC14 279 442 IPR001251 -
Gma06g01427 557 SUPERFAMILY CRAL/TRIO domain 283 444 IPR036865 -
Gma06g01427 557 PANTHER PATELLIN-3 PROTEIN 13 556 - -
Gma06g01427 557 Coils Coil 97 117 - -
Gma06g01427 557 Gene3D - 216 456 IPR036865 -
Gma06g01427 557 SMART sec14_4 277 444 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01427 Gma-Chr6 13564534 13568407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01427 236 436 Acyl Lipid Metabolism Gene Families AT1G55840 27.778 4.63e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01427 - - gmx:100786707 972.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01986 04 50305939 50309774 Gma06g01427 06 13564534 13568407 GST
Gma05g01942 05 40818399 40821338 Gma06g01427 06 13564534 13568407 PCT
Gma08g00049 08 421707 425152 Gma06g01427 06 13564534 13568407 PCT
Gma06g01427 06 13564534 13568407 Gma05g01942 05 40818399 40821338 PCT
Gma06g01427 06 13564534 13568407 Gma08g00049 08 421707 425152 PCT