Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01958 ATGAGCTGGTCTGGAGGAGATTGGATGTGTGGTGCTTGCCAGCACATAAATTTCAAGAAAAGGGATGCATGCCAAAGTTGTGCATACCCTAAATTTGGAGGCCCTGACCCAACAACTTACAGATACAACTCGACTGAAACCTTGGCAGGGGACTGGTATTGCACTGCCATGAACTGTGGAGCTCACAACTTTGCCAGCAGATCAAGCTGCTTTAGATGTGGTGCATTGAAAGATGGTTACTCTTGTAGATTTGGGGGAAACATGGATGGCTCTGGAGGATATGGTTCTGATTGCAATTACCCTCCAGGGTGGAAAACTGGTGACTGGATTTGCACTAGAATTGGCTGTGGAGTGCATAACTATGCCAACAGGACAGAATGCTTCAAGTGCAAAACACCAAGAAATTTTGGTGACGCAGACTAA 423 0.461 MSWSGGDWMCGACQHINFKKRDACQSCAYPKFGGPDPTTYRYNSTETLAGDWYCTAMNCGAHNFASRSSCFRCGALKDGYSCRFGGNMDGSGGYGSDCNYPPGWKTGDWICTRIGCGVHNYANRTECFKCKTPRNFGDAD 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01958 140 SUPERFAMILY Ran binding protein zinc finger-like 101 136 IPR036443 -
Gma06g01958 140 ProSiteProfiles Zinc finger RanBP2 type profile. 105 136 IPR001876 -
Gma06g01958 140 PANTHER ZINC FINGER PROTEIN 1 137 - -
Gma06g01958 140 SUPERFAMILY Ran binding protein zinc finger-like 3 33 IPR036443 -
Gma06g01958 140 Gene3D - 98 136 - -
Gma06g01958 140 Gene3D - 1 35 - -
Gma06g01958 140 Gene3D - 42 79 - -
Gma06g01958 140 ProSiteProfiles Zinc finger RanBP2 type profile. 48 79 IPR001876 -
Gma06g01958 140 ProSiteProfiles Zinc finger RanBP2 type profile. 4 33 IPR001876 -
Gma06g01958 140 Pfam Zn-finger in Ran binding protein and others 49 77 IPR001876 -
Gma06g01958 140 Pfam Zn-finger in Ran binding protein and others 105 134 IPR001876 -
Gma06g01958 140 ProSitePatterns Zinc finger RanBP2-type signature. 52 73 IPR001876 -
Gma06g01958 140 ProSitePatterns Zinc finger RanBP2-type signature. 109 130 IPR001876 -
Gma06g01958 140 SMART zf_4 6 30 IPR001876 -
Gma06g01958 140 SMART zf_4 107 133 IPR001876 -
Gma06g01958 140 SMART zf_4 50 76 IPR001876 -
Gma06g01958 140 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
Gma06g01958 140 PANTHER ZINC FINGER, RANBP2-TYPE-RELATED 1 137 - -
Gma06g01958 140 SUPERFAMILY Ran binding protein zinc finger-like 47 79 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01958 Gma-Chr6 23047412 23048620 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01958 - - gmx:100792208 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01958 06 23047412 23048620 Gma08g01926 08 17313630 17315527 ECH
Gma06g01958 06 23047412 23048620 Gma04g00633 04 5801733 5803055 ECH
Gma06g01958 06 23047412 23048620 Gma06g01958 06 23047412 23048620 ECH
Gma17g01099 17 9407418 9409233 Gma06g01958 06 23047412 23048620 PCT
Gma06g01958 06 23047412 23048620 Gma17g01098 17 9398546 9399731 PCT