Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01345 ATGCTGATCTCTGATGAAGGAGATAGTGATGTGTTCTTTGACTCAGTGGATTGTTTCTCACCAACCCGAGATTCTGTTTTGACAGAACAAGAGTTTGGTTATGAGATTTGGGTGAATGAGCCTGTGAGTGTGATGGAAAGAAGGGAAAAGTTTTTGCAGGAGATGGGGTTGGGTGATGGATCTTCCAAGGTTTGTTCTCAAGAAAATAATGTGATGAGTTCTGATGATTCATCGGAGAGATTGGGACTAGAGAGGATCAGGGATAGTGGGGCAGTGTCAAATGCTTCTTGTAGTTGTATCTTGCCTGATGATGATCAAGTTTCTGAGCTGGTTCTCTCGGGCAGCGAGGCCACTTCTGAGGCACAAGGCTTGTTTGATGAACATAAGGGGTGCCCCAAAGATGAATCATGTTTTGAAGGGAAGGTTTATGAGGTTTCTTGTACAGATCAAGAGGTTAGACATAGAAAAGCCGAGGTTCGAGAAAAGTATATGGGGGAAAAGGAGAAGAAAAACTGGTGGAAGCACTTTATAAGCAGCAAGAAAGGAGGTGGGGGTAAAGTCAGATCAAAATTGAATTCATCGACAAATAAAACTCGAAGAATAAATGTTAGGCAGAATAAGAAGAGGTGGATGGAGCTCAGTGCACTGTATATTGGACAAGAGATTAGAGCTCACAAAGGCCTAATTTGGACTATGAAGTTTAGTCCCAATGGCCAATATCTAGCTAGTGGAGGTGAAGATGGTGTTATACGCATATGGCGTGTAAAAACACTCAATACATCTAGTATTTGCTTCAATGCAGAAGACAGTGCAGCTAACAAAGTGAAACATGACTTCTCTAGTTCTCAGAAGAAACACTCAAGCCAGTCCTTCGTCGTTCTTCCCAGTAAGATTTTCAAAATTGAGGAATCACCGTTGCATGAATTTTCTGGTCATGCCAGTGATGTCTTGGATTTGGCTTGGTCCAATTCAGATACTCTCCTTTCATCTTCTTCGGATAAAACTGTTCGCTTGTGGAAAATTGGTTGTAGTCAATGTCTAAGTGTTTTCCATCACAAAGACTATGTGACTTGTATTCAATTCAACCCTGTTGATGAAAATTACTTCATCAGTGGTTCCATAGACGGCAAAGTCCGAATATGGGGGATACATGAAGAACGAGTTGTTGACTGGGCAGACATAAGAGATGTGATTAGTGCTATAAGTTACCGGCCAGATGGAAAAGGGTTTGTAGTCGGTTCCCTCCCAGGCACTTGCCGCTTTTATGTTGCCTCAGGCAAACATTTCCAGCTTGAGACTAAGATTCATGTCAATGGAAAGAAGAGTACATCTGGCAACAAGATTACAGGCATTCAGTTTTCTCAGAAAAACCATCAGAGAGTTATGATTACATCTGAAGATTCCCGAGTTAGAATATTGGAAGGCACTGAATTTGTTCAGACATATAAAGGCCTTCCAAGATCCGGAAGTCAGATGTCTGGTTCATTTACCTCTGGTGGAGAACATATAGTTTCAGTTGGAGGGGACTCGCGTGTGTATATTTGGAACTTCAATGACTTGGGAAACGCTTCTTCCAAACAGACAAAATCCAAATATTCCTGTGAGCACTTCGGCTCTGAAGGGGTTACTGTTGCATTACCTTGGTCTTGCATGAGTGCAGAAGAACAAAGTGGCTCTTCCAATGATTTTGCCCACCATTCATCGTCACAACACCAACTAGAGGCATCTCATGGCGTTAGGGAGTCGGAACGATTTTCTTTCGGAAGTTGGTTCTCCATTGATGGCTCATGCCGCGGTTCGGTCACATGGCCTGAGGAGACGCTTCCCCGTTGGGATCTACCTCTTGTAGAAGTTGAATTTGATCACCAGAAGCTATGTACCAAAGATCCTTCCCATGAAAAACATGTATCAGAAACATGGGGACTATCCATTGTGGCAGCTGGTTGTGATGGAACCATCAAGACATTCCACAACTTTGGACTTCCCATTAGGCTTTAG 1998 0.4284 MLISDEGDSDVFFDSVDCFSPTRDSVLTEQEFGYEIWVNEPVSVMERREKFLQEMGLGDGSSKVCSQENNVMSSDDSSERLGLERIRDSGAVSNASCSCILPDDDQVSELVLSGSEATSEAQGLFDEHKGCPKDESCFEGKVYEVSCTDQEVRHRKAEVREKYMGEKEKKNWWKHFISSKKGGGGKVRSKLNSSTNKTRRINVRQNKKRWMELSALYIGQEIRAHKGLIWTMKFSPNGQYLASGGEDGVIRIWRVKTLNTSSICFNAEDSAANKVKHDFSSSQKKHSSQSFVVLPSKIFKIEESPLHEFSGHASDVLDLAWSNSDTLLSSSSDKTVRLWKIGCSQCLSVFHHKDYVTCIQFNPVDENYFISGSIDGKVRIWGIHEERVVDWADIRDVISAISYRPDGKGFVVGSLPGTCRFYVASGKHFQLETKIHVNGKKSTSGNKITGIQFSQKNHQRVMITSEDSRVRILEGTEFVQTYKGLPRSGSQMSGSFTSGGEHIVSVGGDSRVYIWNFNDLGNASSKQTKSKYSCEHFGSEGVTVALPWSCMSAEEQSGSSNDFAHHSSSQHQLEASHGVRESERFSFGSWFSIDGSCRGSVTWPEETLPRWDLPLVEVEFDHQKLCTKDPSHEKHVSETWGLSIVAAGCDGTIKTFHNFGLPIRL 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01345 665 SUPERFAMILY WD40 repeat-like 218 516 IPR036322 GO:0005515
Gma06g01345 665 SMART WD40_4 343 382 IPR001680 GO:0005515
Gma06g01345 665 SMART WD40_4 302 340 IPR001680 GO:0005515
Gma06g01345 665 SMART WD40_4 438 474 IPR001680 GO:0005515
Gma06g01345 665 SMART WD40_4 475 516 IPR001680 GO:0005515
Gma06g01345 665 SMART WD40_4 384 423 IPR001680 GO:0005515
Gma06g01345 665 SMART WD40_4 215 254 IPR001680 GO:0005515
Gma06g01345 665 Gene3D - 207 545 IPR015943 GO:0005515
Gma06g01345 665 PRINTS G protein beta WD-40 repeat signature 241 255 IPR020472 -
Gma06g01345 665 PRINTS G protein beta WD-40 repeat signature 327 341 IPR020472 -
Gma06g01345 665 PRINTS G protein beta WD-40 repeat signature 369 383 IPR020472 -
Gma06g01345 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 309 349 IPR001680 GO:0005515
Gma06g01345 665 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 665 - -
Gma06g01345 665 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 309 341 - -
Gma06g01345 665 Pfam WD domain, G-beta repeat 221 253 IPR001680 GO:0005515
Gma06g01345 665 Pfam WD domain, G-beta repeat 345 381 IPR001680 GO:0005515
Gma06g01345 665 Pfam WD domain, G-beta repeat 304 340 IPR001680 GO:0005515
Gma06g01345 665 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 222 257 - -
Gma06g01345 665 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 349 381 - -
Gma06g01345 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 391 IPR001680 GO:0005515
Gma06g01345 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 263 IPR001680 GO:0005515
Gma06g01345 665 SUPERFAMILY Nucleoporin domain 444 658 - -
Gma06g01345 665 PANTHER WD REPEAT DOMAIN 44 1 665 IPR040324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01345 Gma-Chr6 12661115 12670056 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01345 211 422 Miscellaneous Gene Families AT5G08390 21.659 4.40e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01345 K20241 - gmx:100801576 1335.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02070 04 51161436 51164700 Gma06g01345 06 12661115 12670056 GST
Gma05g01870 05 40158495 40163150 Gma06g01345 06 12661115 12670056 PCT
Gma08g01355 08 11501181 11504742 Gma06g01345 06 12661115 12670056 PCT
Gma06g01345 06 12661115 12670056 Gma05g01870 05 40158495 40163150 PCT
Gma06g01345 06 12661115 12670056 Gma08g01355 08 11501181 11504742 PCT