Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01870 ATGCTGAGCTCTGATGATGGAGACATGGATGTGTTCTTTGACTCAGTGGATAGTTTGTCAGCTCAAGATTCTGTTTTAGCCAAAGAAGAGTTTGGTTCTGGAAGGTGTGGTTATGACGAAATTTGGGtgaaggagcctgttagtgtgaaggagaggagggaacgttttctgcagggtttgggcttagctgattctTCTTCCAAGGTTTGTTCACAAGAGAAAATGAGCTTAGATGACTCATCCATCAGCTTGGGATTGGAGAGGATCAGGGAGTGCAGTGGGGCAATCTCAAATGCTTGCATTTTGCATACTGATCAAGTAGTATCTGAGAAGTTGATTCTCTCTGGAGGCAAAGCAGCTTCTAAAGAAAAAATCTCTTTGGATGAATTCAAAGGGTGTCCCCAAGATGAAGCAGAAGCAAACATTCAAGGAAAAGAGCATGAGTTCTCTTCTACAGCTGAGGAGCACAGACCCAGAGAAGCTGTTTCACAAGAAGAATTTCAGGATTTTGATATGAGTAAAAGAAAGAGGAAAAACTGGTGGAAGCGCTTTGTGAACATCAGGAAAAGTGGTGAAGGAAATGTAAGGTCCAAATTGAATGCAGGGACAAATAAAACTCGAAGAATAAAGGTGAGGCAGAATAAAAAGAGGTGGCTGGAGTTCAGTGGCCTATACCTTGGACAAGAGGTTAGAGCACACAAAGGCCTAGTCTGGACCATGAAATTTAGTCCATGTGGTCAGTATTTAGCGAGTGGAGGCGAAGATGGTGTTGTTCGCATATGGTGTGTTACATCACTGGATAAATCCAGTATTTGTTTCACCCCAGAAGACAGTACTTCTAAAAGCAAAGTGGAATGTGACAACTCTTCTCCTCGGAAGAAACACTCAAGCCAACCCTTCATTTTCCTTCCAAATAGTGTTTTTCAAATTGAGGAATCACCACTGCAAGAATTCTTTGGTCATTCCAATGATGTCTTGGATTTGGCTTGGTCTAATTCAGATATTCTCCTTTCATCTTCTATGGACAAGACTGTTCGCTTGTGGCAAATTGGTTGTAATCAATGTCTAAATGTTTTCCATCACAATGACTATGTGACATGCATTCAATTCAACCCTGTTGATGAAAACTACTTCATTAGTGGGTCCATTGATGGTAAGGTTCGAATATGGGGGATACGTGAAGAGCGAGTTATTGACTGGGCAGATATACGAGATGCCATAAGTGCTATAAGTTACCAGCAAGATGGGAAAGGATTTGTAGTTGGTTCTGTTACAGGCACTTGTTGTTTTTATGTTGCTTCAGGAACATATTTCCAGCTTGAGGCTCAGATAGATGTCCATGGAAAGAAGAAAGCGTCCGGCAACAAGATTACTGGCATTCAGTTCTCCCAAAAAAACAGTCAGAGAATAATGATCACATCAGAAGATTCTAAAATTTGTGTATTCGATGGCATTGAGCTTGTTCAGAAATACAGAGGTCTTCCTAAGTCAGGATGTCAGATGTCTAGTTCATTCACATCAAGTGGAAAACATATAATCTCAGTTGGAGAGGACTCCCATGTATATATTTGGAACTTTGATGACATGGGAAATGCTTCTTCAAAACAGACGAAATCCGAACGCTCCTGTGAGTACTTTTTCTCTAAAGGTGTTACTGTTGCAATTCCTTGGTCAGGCATGAAAGCAGATAAAAGGGACTCTAGTGGTAATTATTCCCACCATTCTTCAGAAATGCCAACCCAACAGCTAGAGGTTGCCTCTGAGGCTAGAGATCACAAACGTTTTTCTCTTGGTAATTGGTTCGCCATTGATGGCACGTGTCGAGGTTCTATGACTTGGCCCGAGGAGAAACTTCCTAGCTGGGATTTACCTATAACAGAAGATGAATATGGTCACCAGCAGTTATGTTACAAAGATAATTGCCATGGCAGAAATGTATCAGAAACATGGGGACTATCAATTGTGGCAGCTGGTTGTGATGGAACTATCAAGACATTCCACAACTTTGGATTGCCCGTTAGGCTTTAA 2028 0.3989 MLSSDDGDMDVFFDSVDSLSAQDSVLAKEEFGSGRCGYDEIWVKEPVSVKERRERFLQGLGLADSSSKVCSQEKMSLDDSSISLGLERIRECSGAISNACILHTDQVVSEKLILSGGKAASKEKISLDEFKGCPQDEAEANIQGKEHEFSSTAEEHRPREAVSQEEFQDFDMSKRKRKNWWKRFVNIRKSGEGNVRSKLNAGTNKTRRIKVRQNKKRWLEFSGLYLGQEVRAHKGLVWTMKFSPCGQYLASGGEDGVVRIWCVTSLDKSSICFTPEDSTSKSKVECDNSSPRKKHSSQPFIFLPNSVFQIEESPLQEFFGHSNDVLDLAWSNSDILLSSSMDKTVRLWQIGCNQCLNVFHHNDYVTCIQFNPVDENYFISGSIDGKVRIWGIREERVIDWADIRDAISAISYQQDGKGFVVGSVTGTCCFYVASGTYFQLEAQIDVHGKKKASGNKITGIQFSQKNSQRIMITSEDSKICVFDGIELVQKYRGLPKSGCQMSSSFTSSGKHIISVGEDSHVYIWNFDDMGNASSKQTKSERSCEYFFSKGVTVAIPWSGMKADKRDSSGNYSHHSSEMPTQQLEVASEARDHKRFSLGNWFAIDGTCRGSMTWPEEKLPSWDLPITEDEYGHQQLCYKDNCHGRNVSETWGLSIVAAGCDGTIKTFHNFGLPVRL 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01870 675 Gene3D - 131 399 IPR015943 GO:0005515
Gma05g01870 675 PRINTS G protein beta WD-40 repeat signature 249 263 IPR020472 -
Gma05g01870 675 PRINTS G protein beta WD-40 repeat signature 336 350 IPR020472 -
Gma05g01870 675 PRINTS G protein beta WD-40 repeat signature 378 392 IPR020472 -
Gma05g01870 675 PANTHER WD REPEAT DOMAIN 44 1 675 IPR040324 -
Gma05g01870 675 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 358 393 - -
Gma05g01870 675 SUPERFAMILY WD40 repeat-like 224 664 IPR036322 GO:0005515
Gma05g01870 675 SMART WD40_4 443 483 IPR001680 GO:0005515
Gma05g01870 675 SMART WD40_4 393 432 IPR001680 GO:0005515
Gma05g01870 675 SMART WD40_4 484 525 IPR001680 GO:0005515
Gma05g01870 675 SMART WD40_4 223 262 IPR001680 GO:0005515
Gma05g01870 675 SMART WD40_4 352 391 IPR001680 GO:0005515
Gma05g01870 675 SMART WD40_4 311 349 IPR001680 GO:0005515
Gma05g01870 675 Pfam WD domain, G-beta repeat 229 261 IPR001680 GO:0005515
Gma05g01870 675 Pfam WD domain, G-beta repeat 313 348 IPR001680 GO:0005515
Gma05g01870 675 Pfam WD domain, G-beta repeat 354 390 IPR001680 GO:0005515
Gma05g01870 675 ProSiteProfiles Trp-Asp (WD) repeats profile. 358 400 IPR001680 GO:0005515
Gma05g01870 675 Gene3D - 400 547 IPR015943 GO:0005515
Gma05g01870 675 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 675 - -
Gma05g01870 675 MobiDBLite consensus disorder prediction 148 168 - -
Gma05g01870 675 ProSiteProfiles Trp-Asp (WD) repeats profile. 318 358 IPR001680 GO:0005515
Gma05g01870 675 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 261 IPR001680 GO:0005515
Gma05g01870 675 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 230 261 - -
Gma05g01870 675 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 318 350 - -
Gma05g01870 675 MobiDBLite consensus disorder prediction 276 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01870 Gma-Chr5 40158495 40163150 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01870 K20241 - gmx:100819135 1379.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01870 05 40158495 40163150 Gma08g01355 08 11501181 11504742 GST
Gma05g01870 05 40158495 40163150 Gma04g02070 04 51161436 51164700 PCT
Gma05g01870 05 40158495 40163150 Gma06g01345 06 12661115 12670056 PCT
Gma04g02070 04 51161436 51164700 Gma05g01870 05 40158495 40163150 PCT
Gma06g01345 06 12661115 12670056 Gma05g01870 05 40158495 40163150 PCT