Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02070 ATGCTGATCTCTGATGAAGGAGATAGTGATTTGTTCTTTGACTCAGTGGATTGTTTCTCACCAACCCGAGAGTCTCTTTTGACAAAACAAGAGTTTGGCTATGAGATTTGGGTGAATGAGCCTGTGAGTGTGATGGAAAGAAGGGAAAAGTTTTTGCAGGGGTTGGGATTGGGTGATGGATCATCTTCCAAGGTTTGTTCTCAAGAGAATAATATGATGAGTTCTGATGATTCATCAGTGAGATTGGGACTAGAGAGGATCAGGGATAGTGGGGCAGCTTCAAATGCTTGTAGTTGTATTTTGCCTGATGATCAAGTTTCTGAGTTGGTTCTCTCGGGCAGCGAAGCCACTTCTGAGGCACAAGCCTTGTTTGATGAACATAAGGGATGCCCCAAAGATGAATCATGTTTTGAAGGGAAGGTTTATGAGGTTTCTTGTACAGATCAAGAGGTTAGACATAGAAAAGTCGAGGTTCCAGAAAAGTGTCTTGGTTTTGATATGGGTGAAAAGGAGAAGAAAAACTGGTGGAAGCACTTTATAAGCAGCAAGAAAGGAGGTGGAGGTAAATTCAGATCAAAATTGAATTCAACGACAAATAAAACTCGAAGAATAAATGTAAGGCAGAATAAGAAGAGGTGGATGGAGTTCAGTGCACTGTATATTGGACAAGAGATTAGAGCTCACGAAGGCCTAATTTGGACTATGAAATTTAGTCCCAATGGCCAATATCTAGCTAGTGGAGGAGAAGATGGTGTCATACGCATATGGCGTGTAAAAACACTGAATACATCTAGTATTTGCTTGAATGCAGAAGACAGTGCAGCTAGCAAAGTGAAACATGACTTCTCTAGTTCTCAGAAGAAACACTCAAGCCAATCATCCTTCATCGTTCTTCCAAATAAGATTTTCAAAATCGAGGAATCACCGTTGCATGAATTTTATGGTCATGCAAGTGATGTCTTGGATTTGGCTTGGTCCAGTTCAGATACTCTCCTTTCATCTTCTTCGGATAAAACTGTTCGCTTGTGGAAAATTGGTTGTAGTCAATGTCTAAGTGTTTTCTATCACAAAGACTATGTGACTTGTATTCAATTCAATCCCGTTGATGAAAATTACTTCATCAGTGGTTCCATAGATGGCAAAGTTCGAATATGGGGGATACATGAAGAACGAGTTGTTGACTGGGCAGACATAAGAGATGTGATAAGTGCTATAAGTTACCGACCAGATGCAAAAGGGTTTGTAGTCGGTTCCCTCACAGGCACTTGCCGTTTTTATGTTGCCTCAGGCAAATATTTCCAGCTTGAGACGAAGATTCGTGTCAATGGAAAGAAGAGAACATCTGGCAACAAGATTACAGGCATTCAGTTTTCTCAGAAAAACCATCAGAGAGTTATGATTACATCTGACGATTCCAAAGTTAGAATATTGGAAGGCATTGAACTTGTTCAGACATATAAAGGCCTTTCAAGATCCGGAAGCCAGATGTCTGGTTCATTTACCTCTGGTGGAGAACATATAATTTCAGTTGGAGGGGACTCTCGGGTGTATATTTGGAACTTCAATGACTCGGGAAATGCCTCTTCCAAACAGACAAAATCCAATTATTCCTGTGAGCACTTTGGCTCTGAGGGGGTTACTATTGCAATACCTTGGTCTGGCATGAGTGCAGAAGAACGAAGTGGCTCTTCCAATGATTTTACCCACTATTCTTCACAACACCAACTAGAGGCCTCTCATGGTGTTAGGGAGTCGGAACGATTTTCTTTCGGAAGTTGGTTCTCGATTGATGGTTCATGCCGCGGTTCAGTCACATGGCCCGAGGAGAAGCTTCCAAGTTGGGATCTACCTCTTGTAGAAGTTGAATTTGATCACCAGAAGCTATGTACCAAAGATCCTTCCCATGAAAAACATGTATCAGAAACATGGGGACTATCCATTGTGGCAGCTGGTTGTGATGGAACCATCAAGACATTCCACAACTTTGGACTTCCCATTAGGCTTTAG 2007 0.4165 MLISDEGDSDLFFDSVDCFSPTRESLLTKQEFGYEIWVNEPVSVMERREKFLQGLGLGDGSSSKVCSQENNMMSSDDSSVRLGLERIRDSGAASNACSCILPDDQVSELVLSGSEATSEAQALFDEHKGCPKDESCFEGKVYEVSCTDQEVRHRKVEVPEKCLGFDMGEKEKKNWWKHFISSKKGGGGKFRSKLNSTTNKTRRINVRQNKKRWMEFSALYIGQEIRAHEGLIWTMKFSPNGQYLASGGEDGVIRIWRVKTLNTSSICLNAEDSAASKVKHDFSSSQKKHSSQSSFIVLPNKIFKIEESPLHEFYGHASDVLDLAWSSSDTLLSSSSDKTVRLWKIGCSQCLSVFYHKDYVTCIQFNPVDENYFISGSIDGKVRIWGIHEERVVDWADIRDVISAISYRPDAKGFVVGSLTGTCRFYVASGKYFQLETKIRVNGKKRTSGNKITGIQFSQKNHQRVMITSDDSKVRILEGIELVQTYKGLSRSGSQMSGSFTSGGEHIISVGGDSRVYIWNFNDSGNASSKQTKSNYSCEHFGSEGVTIAIPWSGMSAEERSGSSNDFTHYSSQHQLEASHGVRESERFSFGSWFSIDGSCRGSVTWPEEKLPSWDLPLVEVEFDHQKLCTKDPSHEKHVSETWGLSIVAAGCDGTIKTFHNFGLPIRL 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02070 668 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 668 - -
Gma04g02070 668 Pfam WD domain, G-beta repeat 308 344 IPR001680 GO:0005515
Gma04g02070 668 Pfam WD domain, G-beta repeat 224 256 IPR001680 GO:0005515
Gma04g02070 668 Pfam WD domain, G-beta repeat 349 385 IPR001680 GO:0005515
Gma04g02070 668 Gene3D - 351 564 IPR015943 GO:0005515
Gma04g02070 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 353 385 - -
Gma04g02070 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 260 - -
Gma04g02070 668 SUPERFAMILY WD40 repeat-like 221 657 IPR036322 GO:0005515
Gma04g02070 668 SMART WD40_4 479 520 IPR001680 GO:0005515
Gma04g02070 668 SMART WD40_4 347 386 IPR001680 GO:0005515
Gma04g02070 668 SMART WD40_4 388 427 IPR001680 GO:0005515
Gma04g02070 668 SMART WD40_4 218 257 IPR001680 GO:0005515
Gma04g02070 668 SMART WD40_4 306 344 IPR001680 GO:0005515
Gma04g02070 668 SMART WD40_4 442 478 IPR001680 GO:0005515
Gma04g02070 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 353 IPR001680 GO:0005515
Gma04g02070 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 313 345 - -
Gma04g02070 668 Gene3D - 177 350 IPR015943 GO:0005515
Gma04g02070 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 353 395 IPR001680 GO:0005515
Gma04g02070 668 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Gma04g02070 668 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
Gma04g02070 668 PRINTS G protein beta WD-40 repeat signature 373 387 IPR020472 -
Gma04g02070 668 PANTHER WD REPEAT DOMAIN 44 1 668 IPR040324 -
Gma04g02070 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02070 Gma-Chr4 51161436 51164700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02070 214 426 Miscellaneous Gene Families AT5G08390 22.477 2.45e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02070 K20241 - gmx:100780979 1345.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02070 04 51161436 51164700 Gma06g01345 06 12661115 12670056 GST
Gma05g01870 05 40158495 40163150 Gma04g02070 04 51161436 51164700 PCT
Gma08g01355 08 11501181 11504742 Gma04g02070 04 51161436 51164700 PCT
Gma04g02070 04 51161436 51164700 Gma05g01870 05 40158495 40163150 PCT
Gma04g02070 04 51161436 51164700 Gma08g01355 08 11501181 11504742 PCT