Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00554 ATGAGCACTGGGGAGCTTCTCAACATCGAACCTCTCGAACTCAAGTTCCCCTTTGAGCTGAAGAAGCAGATCTCATGTTCTCTTCAATTGTCCAATAAGACCGATAGCTATGTGGCCTTCAAGGTGAAAACAACCAATCCGAAGAAGTATTGTGTTCGTCCGAACACTGGTATTGTCACGCCACGATCTACGTGTGATGTTATCGTTACCATGCAAGCGCAAAAAGAGGCTCCTGCTGATATGCAATGCAAGGATAAGTTTCTTCTTCAGAGCGTAAAAACTGTTGATGGTACCAGTCCGAAGGATATCACTGCAGACATGTTCAACAAGGAGGCAGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGCTGTATGTTTCTCCACCTCAACCACCGTCTCCTGTCCCAGAAGGTTCTGAGGAAGGATCCTCACCTAGAGGTTCTGTTTCAGAGAATGGAAATGCCAATGGTTCTGACTTCACACAAGTGGCAAGAGGATTTACTGAGCGGCCTGAATCTCAAGACAAATCTGCAGAGGCTAGAGCTCTTATCTCAAGGCTGACTGAAGAAAAGAATAATGCAATTCAACAAAATAGCAAGCTCCACCAGGAACTGGAGCTACTGAAGAGGGAAGGCAACAAAAGTCGTGGTGGAGTCTCATTTGTCATTGTCGTATTAATTGGCTTGCTTGGCATAATTATGGGGTATCTCATGAAGAAGACCTAA 726 0.4532 MSTGELLNIEPLELKFPFELKKQISCSLQLSNKTDSYVAFKVKTTNPKKYCVRPNTGIVTPRSTCDVIVTMQAQKEAPADMQCKDKFLLQSVKTVDGTSPKDITADMFNKEAGHVVEECKLRVLYVSPPQPPSPVPEGSEEGSSPRGSVSENGNANGSDFTQVARGFTERPESQDKSAEARALISRLTEEKNNAIQQNSKLHQELELLKREGNKSRGGVSFVIVVLIGLLGIIMGYLMKKT 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00554 241 PIRSF VAMP_assoc_prot 1 240 IPR016763 GO:0005789
Gma05g00554 241 SUPERFAMILY PapD-like 2 141 IPR008962 -
Gma05g00554 241 Pfam MSP (Major sperm protein) domain 7 111 IPR000535 -
Gma05g00554 241 MobiDBLite consensus disorder prediction 143 160 - -
Gma05g00554 241 Gene3D Immunoglobulins 2 130 IPR013783 -
Gma05g00554 241 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 1 239 IPR016763 GO:0005789
Gma05g00554 241 Coils Coil 177 211 - -
Gma05g00554 241 MobiDBLite consensus disorder prediction 127 160 - -
Gma05g00554 241 PANTHER VESICLE-ASSOCIATED PROTEIN 1-2-LIKE 1 239 - -
Gma05g00554 241 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 126 IPR000535 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00554 Gma-Chr5 5476002 5479948 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00554 - - gmx:100527687 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00554 05 5476002 5479948 Gma05g00554 05 5476002 5479948 ECH
Gma17g01301 17 11672429 11676977 Gma05g00554 05 5476002 5479948 GST
Gma05g00554 05 5476002 5479948 Gma01g02073 01 56120948 56124612 PCT
Gma05g00554 05 5476002 5479948 Gma11g00342 11 2739383 2743465 PCT