Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02073 ATGACCGCCTCTCAACTCATCTCCGTTAGTCCCGACGAACTCCGCTTCCATTTTGAGTTGGAGAAGCAAACATTTTGCGATCTTAAGGTCCTCAATAATTCCCAGAACTATGTTGCTTTCAAGGTCAAAACCACTTCACCAAAGAAATACTTTGTGCGACCTAACACCGGCGTTGTACAGCCCTGGGACTCCTGTATCATCAGAGTCACCCTCCAAGCCCAACGGGAATACCCTCCAGACATGCAATGTAAAGACAAGTTTCTCTTACAGAGTACAACAGTGAATCCAAATACTGATCTTGATGATCTCCCACCAGATACTTTTAATAAGGAGAGTGGTAATTCAGTAGAGGAGTTGAAATTGAGAGTTGCATATATCTCTCCTACCTCACCTGAAGATGATGCATCAAAGAACTCACAAAGCCTCAATTCCTCTTCTAGTCAGGCTTTACAGAATCTGAAGGAAGAAAGAGATGCCGCTGCCAGACAAACGAGACAGCTGCAACAGGAACTGGACATGCTGAAAAGACGAAGAAACCGAAGAAGTGATCCTGGCTTTTCCTTCACCTTTGCCATTTTTGTGGGTCTCCTTGGAGCTTTACTTGGCTTTCTAATGAAACTTTTATTCTCTTCTCCATCTACAGAATGA 648 0.4367 MTASQLISVSPDELRFHFELEKQTFCDLKVLNNSQNYVAFKVKTTSPKKYFVRPNTGVVQPWDSCIIRVTLQAQREYPPDMQCKDKFLLQSTTVNPNTDLDDLPPDTFNKESGNSVEELKLRVAYISPTSPEDDASKNSQSLNSSSSQALQNLKEERDAAARQTRQLQQELDMLKRRRNRRSDPGFSFTFAIFVGLLGALLGFLMKLLFSSPSTE 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02073 215 MobiDBLite consensus disorder prediction 129 164 - -
Gma01g02073 215 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 3 212 IPR016763 GO:0005789
Gma01g02073 215 PANTHER VESICLE-ASSOCIATED PROTEIN 2-1 3 212 - -
Gma01g02073 215 MobiDBLite consensus disorder prediction 131 153 - -
Gma01g02073 215 Coils Coil 143 177 - -
Gma01g02073 215 Pfam MSP (Major sperm protein) domain 7 103 IPR000535 -
Gma01g02073 215 PIRSF VAMP_assoc_prot 135 207 IPR016763 GO:0005789
Gma01g02073 215 PIRSF VAMP_assoc_prot 1 160 IPR016763 GO:0005789
Gma01g02073 215 SUPERFAMILY PapD-like 3 136 IPR008962 -
Gma01g02073 215 Gene3D Immunoglobulins 2 130 IPR013783 -
Gma01g02073 215 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 126 IPR000535 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02073 Gma-Chr1 56120948 56124612 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02073 - - gmx:100305949 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02073 01 56120948 56124612 Gma11g00342 11 2739383 2743465 GST
Gma17g01301 17 11672429 11676977 Gma01g02073 01 56120948 56124612 PCT
Gma05g00554 05 5476002 5479948 Gma01g02073 01 56120948 56124612 PCT