LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma05g00305	ATGAAAAGAGGGAGAACAGGCAAGTTCGACAATTTGGTCGCACTGAGCAGACAACGATCCATTCAGATTCTCATCGCCATTGCGCTCTTGTACGTCCTCTTCCTCACCCTCGAAATCCCCTTCGTCTTCAGAACCGCCCAACAACCCACTCACACCCGCCGTCAACTCGTTCGCCGCCAAAACGGCGTCGTCTCCGCCTTGGTCCTAAACGACGCCGCGTTCGATTCGGAGCTCTACCAATCCGCCTGCCGCGCGGGAAAGACCGTCTGGGAGGAACTAAGATCAGGAAGCCCGCCGGGCCCCATTCCGAGTCCTGAGAATCGATCCGGGCCGTGTCCGGAATCCGTTTCGGTGTCCGGGCCCGAGTTTCTGGGCCGCGGAAGTGTGATGGTGATTCCGTGTGGGCTCACGTTGGGGTCCCACGTAACGGTGGTTGGGAAGCCGTTAAGGGCGCAACGGAAGACGTGTCAGTTCGTGATGGAGTTGCAGGGGCTGAAAACGGTGGAGGGTGAGGAACCGCCTAGGGTGATGCATTTCAACCCTAGGTTGAAAGGGGATTGGAGTGGGAAGCCTGTGATTGAACTCAACACGTGTTACCGCATGCATTGGGGTACTGCATTGCGCTGTGATGGTTGGAAATCCAGAGCTGGTGAAGATACTGTTGATGGGTTGGTGAAGTGTGAGAAGTGGATTAGGGGTGATGATGATGATAGGGATGCAGTGGAGACCAAGGCAGCGTGGTGGTTGAAGAGATTGATAGGGCGGCCAAAACGAGTAACAGTTGACTGGCCATTTCCATTTTCTGAGAACAAGCTATTTATTCTTACTCTTAGTGCTGGATTGGGGGGTTACCATATTAATGTTGATGGGAGGCATGTCACCTCTTTTCCTTATCACACTGGATTTACTCTTGAGGATGCCACTGGTCTTACTTTGAGTGGGGACATTGATGTCCATTCTGTATTTGCTGCCTCTTTGCCTTCGGTGCATCCCAATGTTTCTTCGCAGCAACATCTTGAATTTTCAACCAGATGGCGTGCCCCGAATCTTCCTCGCTATGGTGTGGAATTGTTTGTAGGGATCCTTTCGGCTGGAAACCATTTTGCTGAGCGGATGGCTGTGAGGAAGTCATGGATGCAGCATAGCTTTATCAAGTCTTCTAAAGTGGTCGCTCGTTTCTTTGTAGCACTGCACCCGAGGAAGGAAATTAATGTGGAGTTGAAGAAGGAAGCAGAATATTTTGGTGATATTGTTATAGTTCCTTACATTGATAACTATGACCTTGTTGTGTTGAAAACAGTGGCCATATGTGAATATGGGGTTCGCACAGTTTCTGCGGAGTATATCATGAAAGGTGATGATGACACTTTTGTAAAAGTTGATGCTGTTATGAATCAAGCAAGGAATGTTCCACGTTCTATGAGCTTTTATATTGGGAACATTAATTACCGTCACAAACCCTTGCGCCGTGGTAAATGGGCTGTGACATATAAGGAGTGGCCAGAAGAGGAATACCCACCCTATGCTAATGGACCGGGTTATGTTTTGTCTTCTGATATTGCACACTACATTGTATCTGAATTTGAGATGAATAAATTAAGGTTGTTTAAGATGGAAGATGTGAGTATGGGAATGTGGGTAGAGCAGTTTAACCGGACGAAACCGGTAAACTATTTGCATAGCTTCAAGTTCTGCCAATACGGTTGTGTAGAAGGCTATTACACAGCCCATTACCAATCGCCTAGGCAGATGATGTGCCTGTGGGACAAATTGCAGATGCAGACAACGCCTGAGTGCTGCAACATGAGATAA	1812	0.4851	MKRGRTGKFDNLVALSRQRSIQILIAIALLYVLFLTLEIPFVFRTAQQPTHTRRQLVRRQNGVVSALVLNDAAFDSELYQSACRAGKTVWEELRSGSPPGPIPSPENRSGPCPESVSVSGPEFLGRGSVMVIPCGLTLGSHVTVVGKPLRAQRKTCQFVMELQGLKTVEGEEPPRVMHFNPRLKGDWSGKPVIELNTCYRMHWGTALRCDGWKSRAGEDTVDGLVKCEKWIRGDDDDRDAVETKAAWWLKRLIGRPKRVTVDWPFPFSENKLFILTLSAGLGGYHINVDGRHVTSFPYHTGFTLEDATGLTLSGDIDVHSVFAASLPSVHPNVSSQQHLEFSTRWRAPNLPRYGVELFVGILSAGNHFAERMAVRKSWMQHSFIKSSKVVARFFVALHPRKEINVELKKEAEYFGDIVIVPYIDNYDLVVLKTVAICEYGVRTVSAEYIMKGDDDTFVKVDAVMNQARNVPRSMSFYIGNINYRHKPLRRGKWAVTYKEWPEEEYPPYANGPGYVLSSDIAHYIVSEFEMNKLRLFKMEDVSMGMWVEQFNRTKPVNYLHSFKFCQYGCVEGYYTAHYQSPRQMMCLWDKLQMQTTPECCNMR	603

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma05g00305	603	MobiDBLite	consensus disorder prediction	94	116	-	-
	Gma05g00305	603	Pfam	Galactosyltransferase	370	550	IPR002659	GO:0006486\|GO:0016020\|GO:0016758
	Gma05g00305	603	CDD	GLECT	132	322	IPR001079	GO:0030246
	Gma05g00305	603	ProSiteProfiles	Galactoside-binding lectin (galectin) domain profile.	128	324	IPR001079	GO:0030246
	Gma05g00305	603	SUPERFAMILY	Concanavalin A-like lectins/glucanases	130	322	IPR013320	-
	Gma05g00305	603	SMART	Gal_bind_lectin_2	132	323	IPR001079	GO:0030246
	Gma05g00305	603	Pfam	Galactoside-binding lectin	129	322	IPR001079	GO:0030246
	Gma05g00305	603	PANTHER	BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE	70	603	IPR002659	GO:0006486\|GO:0016020\|GO:0016758
	Gma05g00305	603	PANTHER	BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE	9	48	IPR002659	GO:0006486\|GO:0016020\|GO:0016758
	Gma05g00305	603	Gene3D	-	248	322	-	-
	Gma05g00305	603	PANTHER	HYDROXYPROLINE O-GALACTOSYLTRANSFERASE GALT5	9	48	-	-
	Gma05g00305	603	PANTHER	HYDROXYPROLINE O-GALACTOSYLTRANSFERASE GALT5	70	603	-	-
	Gma05g00305	603	Gene3D	-	354	599	-	-
	Gma05g00305	603	Gene3D	-	128	221	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma05g00305	Gma-Chr5	2795904	2799321	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma05g00305	2	603	Glycosyltransferase	AT1G74800	60.570	0.0	808

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma05g00305	K20843		-	gmx:100800292	1235.71

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma05g00305	05	2795904	2799321	Gma17g00896	17	7619780	7623160	ECH
	Gma05g00305	05	2795904	2799321	Gma05g00305	05	2795904	2799321	ECH
	Gma17g00896	17	7619780	7623160	Gma05g00305	05	2795904	2799321	GST
	Gma05g00305	05	2795904	2799321	Gma04g01707	04	46268144	46271779	PCT
	Gma05g00305	05	2795904	2799321	Gma06g01685	06	16840807	16844162	PCT
	Gma04g01707	04	46268144	46271779	Gma05g00305	05	2795904	2799321	PCT
	Gma06g01685	06	16840807	16844162	Gma05g00305	05	2795904	2799321	PCT