Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01473 ATGGCCGAGCACGATTTTGATGGACATGTTGTAGGATATGTGCCCGAGGACCCTAATTTTCCTCAGAATCATTCTGATGAACATGATGTAGGGACTGTGATTGATAGCTCTGGATTTCCTCACCTGCTGCCTGATGAAGATGATGCAGGCAATTTGGTGGAGGATGCCAATTTTCCTGAAAATCATTTTGATGGACATGAACATGATGTTGGAGGTTTTCCTGGGGACACGGACTCTCCACAGAAGGAGGAGCATGTTGAAGAAGGTCATGGTGCTGGAGATGTGCCTGAGGATTTTGATTCTCTGCTGAAACAGGAATCTGAGATTGATTCGAAAGGGAATGAAATTAAAAAGTGGCCCGGATGGCCTGGCGAGAATGTGTTCAGGATGTTGGTTCCGGTGCAAAAGGTTGGCAGTATTATTGGCCGAAAGGGCGAGTTTATAAAGAAAATTACAGAAGAGACTAAGGCGCGGATTAAAATTCTTGATGGTCCACCTGGAATCTCAGAAAGAGCAGTAATGGTTTCTGCAAAAGAAGAACCAGATCGTCCCATACCACCTGCTATTGATGGTTTGTTAAGGGTTCATAAGCAAGTTATCAATGTTGACCGTGACCTTGTGGATAGTGCTTTGGCAGCTGGGCGATCAGTTGTTACCAGGCTTCTAGTAGCAGATACTCAAGCAGGAAGCTTGATCGGAAAGCAGGGATCAACCATAAAATCCATTCAAGATGGCTCTGGTTGTACTATACGTGTTCTTGGATCAGAAAACCTGCCAGTATTTGCTTTGCGAGATGATAGTATTGTTGAAATACAAGGGGAATCTGCTGGTGTTCACAAGGCAGTTGAACTTATTGCAGTTCATTTACGCAAGTTCTTGGTTGACCGCAGCATAGTTGGAGTTTTTGAAACACAGATGCAAAGGCCAGATGTTAGAGTTAACCAGAATGTGCCACCACATCAAAATTGGGGTCCTCCTCCTCAAGGGTTTCCTGCTCCTGCTGGTGGTGGTGGTGGAGGACCTGCTTTTGCACCAAATCATCAATATATGCCACCTTCACATCACTATGATAGCTATTATCCACCTACTGAGTTGCCTCCCATGGACAAACACCTTCATCAAGGTCCACCACCTGCCTATGCAAAGGATGCTTCAATGGGAATTCATTCATCAAGTGCACCACCACAACAATCTGTTGTAACTAAGGTCACACAACACATGCAAATTCCTCTTACATATGCAGATGCTGTTATAGGAGCATCAGGCACAAATATCAGCTATATACGTCGTGCTAGTGGAGCAAGTATTACAATTCAGGAAACAAGGGGTGTGCCAGGTGAGATGACTGTTGAGATAAGCGGGACTTCTTCTCAAATACAGGCAGCCCAGCAGCTGGTTCAGAATTTCATGGCTGAAGCTGCAAGTGCTACACAGGATCCTATGGGGGGATCAGTCAGCCAAGGTTACAGTGCCTATCCAACAACTGCTCCAGTTTATGCTCCACCCACTAGTGCTGGTGGTGGTGGTCATACAGGCCATGCGCCTTCTGCAGATTATGGCCCCCTATATGGTACCAATTATGGGTATTAA 1590 0.4553 MAEHDFDGHVVGYVPEDPNFPQNHSDEHDVGTVIDSSGFPHLLPDEDDAGNLVEDANFPENHFDGHEHDVGGFPGDTDSPQKEEHVEEGHGAGDVPEDFDSLLKQESEIDSKGNEIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGISERAVMVSAKEEPDRPIPPAIDGLLRVHKQVINVDRDLVDSALAAGRSVVTRLLVADTQAGSLIGKQGSTIKSIQDGSGCTIRVLGSENLPVFALRDDSIVEIQGESAGVHKAVELIAVHLRKFLVDRSIVGVFETQMQRPDVRVNQNVPPHQNWGPPPQGFPAPAGGGGGGPAFAPNHQYMPPSHHYDSYYPPTELPPMDKHLHQGPPPAYAKDASMGIHSSSAPPQQSVVTKVTQHMQIPLTYADAVIGASGTNISYIRRASGASITIQETRGVPGEMTVEISGTSSQIQAAQQLVQNFMAEAASATQDPMGGSVSQGYSAYPTTAPVYAPPTSAGGGGHTGHAPSADYGPLYGTNYGY 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01473 529 CDD PCBP_like_KH 218 286 - -
Gma03g01473 529 Coils Coil 459 479 - -
Gma03g01473 529 CDD PCBP_like_KH 127 196 - -
Gma03g01473 529 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 392 473 IPR036612 GO:0003723
Gma03g01473 529 MobiDBLite consensus disorder prediction 1 52 - -
Gma03g01473 529 Gene3D K Homology domain, type 1 125 185 IPR036612 GO:0003723
Gma03g01473 529 MobiDBLite consensus disorder prediction 72 96 - -
Gma03g01473 529 ProSiteProfiles Type-1 KH domain profile. 402 466 - -
Gma03g01473 529 ProSiteProfiles Type-1 KH domain profile. 125 192 - -
Gma03g01473 529 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 51 523 - -
Gma03g01473 529 ProSiteProfiles Type-1 KH domain profile. 216 285 - -
Gma03g01473 529 Pfam KH domain 128 180 IPR004088 GO:0003723
Gma03g01473 529 Pfam KH domain 219 285 IPR004088 GO:0003723
Gma03g01473 529 Pfam KH domain 404 467 IPR004088 GO:0003723
Gma03g01473 529 Gene3D K Homology domain, type 1 390 478 IPR036612 GO:0003723
Gma03g01473 529 SMART kh_6 401 471 IPR004087 GO:0003676
Gma03g01473 529 SMART kh_6 124 197 IPR004087 GO:0003676
Gma03g01473 529 SMART kh_6 215 290 IPR004087 GO:0003676
Gma03g01473 529 CDD KH-I 404 467 - -
Gma03g01473 529 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 117 180 IPR036612 GO:0003723
Gma03g01473 529 Gene3D K Homology domain, type 1 216 292 IPR036612 GO:0003723
Gma03g01473 529 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 213 298 IPR036612 GO:0003723
Gma03g01473 529 PANTHER POLY(RC)-BINDING-LIKE PROTEIN 51 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01473 Gma-Chr3 40954893 40959618 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01473 K21444 - gmx:100813235 1019.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01531 19 44651316 44656486 Gma03g01473 03 40954893 40959618 GST
Gma03g01473 03 40954893 40959618 Gma10g00318 10 2958518 2964736 PCT
Gma03g01473 03 40954893 40959618 Gma02g01282 02 14911723 14917873 PCT
Gma10g00318 10 2958518 2964736 Gma03g01473 03 40954893 40959618 PCT
Gma02g01282 02 14911723 14917873 Gma03g01473 03 40954893 40959618 PCT