Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma02g00543 ATGCCACCTTCTTACTGCGTGAATGAGAGAAAACCATGTGTGAGATGGGTGGAGAAATATTTCAAAGATTGCCTTTGCAATTTGAAAGATGAAATCTCGTTTAGTTTCGGGCTCACAAGTCTAGTGTTCTGGGGTGTAGCTGAAATTCCTCAAATAATAACCATTTTTCGTACCAAGAAAAGCCATGGAGTTTCCCTTGTCTTTCTCCTCACTTGGGTTGCTGGGGATATATGCAATTTGACGGGATGCATTCTTGAACCAGCTACTTTGCCAACACAGTACTACACAGCTCTGCTTTACACGATCACTACGATCGTATTACTACTGCTAATAGTATATTATGACTACATCAGCAGATGGTACAAACATCGTCAGAAGGTCAACCTCGTAAGGGATCACGAAGAAGAGAAAAAACCATTGAAGCCACCGAAACCCACTAACAAATCTGGAATCCCAATACCAAATGGCTCACCCAAGGCAGCACCTAGACAGGAGTACTATTATATGTCAGCAAGATCATTGGCTGGGAGTGGCACTCCACCCTGGGGAATCTACATGAGAGCTGCTAAAAGTGGTCCTTCAGCCATCGAATCGATCGATGACTCTTCTTCCGATGACGAAGCACCTCCTGCTTCCTCAAATAATTCTGCATCCCAAGCTATGCCAATCCCACGTTCTGTTGCTGGAAGTTATGGAACATTTCTAGCAGCTGCTGTTAATTTGCCTCTCAAGGGTAATGCTTTGAGGCAAGGATACATAGGATATGGTGGAAGAAAACTTTTGCAGGAGTACGAGAAACATAGTACATTTGGTCAATGGCTGGGATGGCTCATGGCTGCTATCTATATAAGTGGTCGAGTTCCTCAAATATGGTTGAATATTAAAAGAAGCAGTGTGGAGGGCTTAAATCCTTTCATGTTCGTCTTCGCATTGGTTGCTAATGTCACTTACGTGGGAAGTATTCTTGTAAGAACCACAGAATGGGAAAGCATCAAAGCTAATATGCCATGGTTATTGGATGCCGTAATTTGCGTGGCATTGGACATTTTCATAATATCGCAATACATCTACTACAGATACTTTCGAAGGAGAGAAGCAAAAGATGATTATAAAGAAGCGGGAAAAGTTGCTGCATCTTGA 1140 0.4254 MPPSYCVNERKPCVRWVEKYFKDCLCNLKDEISFSFGLTSLVFWGVAEIPQIITIFRTKKSHGVSLVFLLTWVAGDICNLTGCILEPATLPTQYYTALLYTITTIVLLLLIVYYDYISRWYKHRQKVNLVRDHEEEKKPLKPPKPTNKSGIPIPNGSPKAAPRQEYYYMSARSLAGSGTPPWGIYMRAAKSGPSAIESIDDSSSDDEAPPASSNNSASQAMPIPRSVAGSYGTFLAAAVNLPLKGNALRQGYIGYGGRKLLQEYEKHSTFGQWLGWLMAAIYISGRVPQIWLNIKRSSVEGLNPFMFVFALVANVTYVGSILVRTTEWESIKANMPWLLDAVICVALDIFIISQYIYYRYFRRREAKDDYKEAGKVAAS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma02g00543 379 Pfam PQ loop repeat 32 88 IPR006603 -
Gma02g00543 379 Pfam PQ loop repeat 271 328 IPR006603 -
Gma02g00543 379 PANTHER SEVEN TRANSMEMBRANE PROTEIN 1-RELATED 1 379 - -
Gma02g00543 379 MobiDBLite consensus disorder prediction 195 222 - -
Gma02g00543 379 MobiDBLite consensus disorder prediction 205 222 - -
Gma02g00543 379 SMART ctns 46 77 IPR006603 -
Gma02g00543 379 SMART ctns 284 315 IPR006603 -
Gma02g00543 379 MobiDBLite consensus disorder prediction 131 158 - -
Gma02g00543 379 PANTHER PQ-LOOP PROTEIN/TRANSMEMBRANE FAMILY PROTEIN 1 379 - -
Gma02g00543 379 Gene3D - 35 125 - -
Gma02g00543 379 Gene3D - 270 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma02g00543 Gma-Chr2 5393572 5400960 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma02g00543 K23678 - gmx:100789634 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g00543 02 5393572 5400960 Gma02g00543 02 5393572 5400960 ECH
Gma16g01303 16 31685181 31689958 Gma02g00543 02 5393572 5400960 GST
Gma01g01820 01 53794334 53799103 Gma02g00543 02 5393572 5400960 PCT
Gma11g00580 11 4869987 4874054 Gma02g00543 02 5393572 5400960 PCT
Gma02g00543 02 5393572 5400960 Gma01g01820 01 53794334 53799103 PCT
Gma02g00543 02 5393572 5400960 Gma11g00580 11 4869987 4874054 PCT