Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01820 ATGCCAGAATCGTACTGCGTGAAGGAGAGTAAACCCTGTGTGGGTTGGGTTGAGAAATACTTGGATGATTGTCTCTGCAATTTGAAAGATAAAATCTCCTTTGGCTTTGGCTTCATAAGTCTCGTATGTTGGGGAGTAGCAGAAATTCCTCAGATAATAACCAACTTTCGCGCTAAGTCCAGCCATGGTGTCTCCTTAGCCTTTCTCCTCACTTGGGTCGCTGGCGACATATTCAACCTCCTTGGTTGCCATCTGGAGCCAGCCACGTTGCCAACCCAGTACTACACAGCTCTGCTTTACACAATCACTACGATCGTGTTAGTACTTCAAAGTTTCTATTATGACTACATCTATAAATGGGGCAAGCCTCTTCGGAAGATTAACATCGATGAGGCTCATGAAGAAGAAGAGAAAAAACCTTTGAGACAGAAACCAGGCCGCGACTCTGGGATTCCAATACAAAATGACGGACCCAAAGAAACGCCTCGACGGGATTACTACTATAGGTCAGCGAGATCTTTGGCTGCTAATGATACTCCACCATTTGGTACCTACTTGAGAGCTGCTAAAAGTGTCCCTTCAGCCATGGAAATGAACAATGATTCATCCTCAGATGATGAGGCACCTCCACTCTCTTCTACGAAGCCTGTAACACAGCCTAGACCAATCCCCCGTTCTGTCCCTGCAAGCTATGGAACTTTTCTAGCAGCATCTATGAACTTGCCCCGGCAGGGTAATGCTTTGATGGAGGGATACAAAAGATTCAATGGAAGAAAGCTACTCTCGCAGGAGCACAACATGCACAGTGCTTTGGGTCAATGGTTAGGATGGCTCATGGCTGTTATCTATATGGGTGGCCGGCTTCCTCAAATATGGTTGAATATTAAAAGAGGGAGCGTGGAGGGCTTAAATCCACTCATGTTCATCTTTGCATTGATCGCCAATGCCACTTACGTGGGAAGTATTCTTGTACGAACTATCGAATGGGAAAGTATCAGAGCTAATATGCCATGGCTTTTGGATGCCATTGTTTGCGTGGCATTGGACCTATTCATAATTTTGCAGTATGCCAACTACAGATACGTTCGGAAGAAAACAGGAAGTGATGATGCTGATTATGGAGACTACAAAGAAGCCAGCAAAACTTTTGTGTCTTGA 1158 0.4508 MPESYCVKESKPCVGWVEKYLDDCLCNLKDKISFGFGFISLVCWGVAEIPQIITNFRAKSSHGVSLAFLLTWVAGDIFNLLGCHLEPATLPTQYYTALLYTITTIVLVLQSFYYDYIYKWGKPLRKINIDEAHEEEEKKPLRQKPGRDSGIPIQNDGPKETPRRDYYYRSARSLAANDTPPFGTYLRAAKSVPSAMEMNNDSSSDDEAPPLSSTKPVTQPRPIPRSVPASYGTFLAASMNLPRQGNALMEGYKRFNGRKLLSQEHNMHSALGQWLGWLMAVIYMGGRLPQIWLNIKRGSVEGLNPLMFIFALIANATYVGSILVRTIEWESIRANMPWLLDAIVCVALDLFIILQYANYRYVRKKTGSDDADYGDYKEASKTFVS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01820 385 SMART ctns 46 77 IPR006603 -
Gma01g01820 385 SMART ctns 285 316 IPR006603 -
Gma01g01820 385 MobiDBLite consensus disorder prediction 194 224 - -
Gma01g01820 385 MobiDBLite consensus disorder prediction 135 163 - -
Gma01g01820 385 PANTHER PQ-LOOP REPEAT FAMILY PROTEIN / TRANSMEMBRANE FAMILY PROTEIN 3 382 - -
Gma01g01820 385 PANTHER SEVEN TRANSMEMBRANE PROTEIN 1-RELATED 3 382 - -
Gma01g01820 385 MobiDBLite consensus disorder prediction 195 214 - -
Gma01g01820 385 Gene3D - 35 120 - -
Gma01g01820 385 Gene3D - 272 373 - -
Gma01g01820 385 Pfam PQ loop repeat 32 85 IPR006603 -
Gma01g01820 385 Pfam PQ loop repeat 271 326 IPR006603 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01820 Gma-Chr1 53794334 53799103 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01820 K23678 - gmx:100815310 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01820 01 53794334 53799103 Gma01g01820 01 53794334 53799103 ECH
Gma01g01820 01 53794334 53799103 Gma11g00580 11 4869987 4874054 GST
Gma01g01820 01 53794334 53799103 Gma16g01303 16 31685181 31689958 PCT
Gma01g01820 01 53794334 53799103 Gma02g00543 02 5393572 5400960 PCT
Gma16g01303 16 31685181 31689958 Gma01g01820 01 53794334 53799103 PCT
Gma02g00543 02 5393572 5400960 Gma01g01820 01 53794334 53799103 PCT