Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1176 ATGAGAACGGGTAGCTGTGCTGTCCAACAGGGTCTAACTACAGAGGCTGCAAACATAGTAAAGCAAGCGGTAACACTGGCGAAGCGTCGTGGGCATGCCCAGGTCACTCCCCTTCATGTGGCAAACACTATGCTGGTCGCTACCAACGGCCTCCTTAGAATGGCTTGTCTCCAATCTCATTCCCATCCCCTCCAGTGCAAGGCCTTGGAGCTTTGCTTCAATGTAGCGCTCAACCGCTTGCCTGCCTCCAATTCTAGCCCAATCTTTTCCTCTCGCTCTTACTCTCCTTCTATCTCTAACGCCTTGGTTGCTGCCTTCAAGCGAGCTCAGGCTCACCAGCGCCGCGGATCTGTCGAGAACCAGCAGCAACCTCTATTAGCAGTCAAAATAGAGTTGGAGCAGCTCACAATTTCCATTCTGGATGATCCTAGTGTTAGTAGAGTCATGAAAGAAGCTGGATTCTCTAGTACCCAAGTGAAAAGCAATGTAGAGCAAGCTCTGTCTTTGGAAATATATTCTCAAAATACCCCTTTGAGTTCCAAGTCCAAGGAAAACAATAATCAACCTGCGATAAGGGCCGAGGACATCACGAGCGTCATAGATAATTTGAAGAATCAGAGAAGGAGAAGTACTGTGATTGTGGGTGAGTGTCTAGTTAGTCTTGAGGGTATAGTTAGAGGAGTGATGGACAAGGTCGACAAAGGAGATGTTGATGAGGCTCTCAAAGATGTTAAGTTTATTTCTCTTTCTGCTTCTGCTTTTGGCCATGTCTCTGAAGTAGAGGTTGAGCACAAGATTGAAGAGCTTAGGAGCCTTGCAAGGAACTGTCATAACAGAGGGTTTATTTTGTACCTTGGAGATCTTAAATGGGTGTTTGAGTATAGGGCTCGTTCAAGTCAGCAAGGGAGACGGTACTACTGTCCCGTGGAGCACATGATTATGGAAGTGGGAAAGCTGGTTAGTGGGTTTGGAGAGAATGGAAGGTTTACGGTCCTGGGTATAGCCAGTTTCCAGACTTACATGAGATGTAAAGATGGCCATCCATCACTAGAGACTATTTGGGGACTTCATCCTCTTACTATTCCTGCGGCCAGCTTGCGCCTGAGTCTCATCACTGACAGCGACAGTGGTCTACAAAATGAGTCGGCCAAGAAGAAAGCTGACAATGGAACCACCTGGCTATTACTCGAACGAGGGGAGGAGAAGCAAACAGCTTGCTTCGCTGAGCCTTGGGCCAAGTTGGAGCCAGAAGTTCGAAGCTTGCAGAGCATTAGTACTTGTAATAGTGACTCTTCCACAAGCCTTCCTGCATGGCTCCAACAGTACAAACATGAGAATAGAGGAACCTCTAATGATCAGAAGCGTGTCCCAGTGGGAGAACTTTGCCAAAAGTGGAATTCTGTATGCAGTTCAGTCCAAAAACAGCCCTATCCTTCTGAGAGAACCCTCGTATTCTCCTCTGTATCACCTTGTTCATCAACCTCGGGCTCTTCATATAACCCGGGACACCCTAATTTGCACCAGAGCCACCCTTTATGGATCCCCAAAAGTGGTAATAAGCCAAATGAACCCACTTTGAGAATGTACATCCAACCATTCCCGTCATCGAATCCTAATTCCACATCCTCTAGCAACTTCATGGAAACGGAGTACGTGAGCAAGTTCAAAGAGCTCAATTCAGAGAATCTGAAAACCCTATGCAATGCTTTGGAGGAAAAGGTCCCGCGGCAGAAAGATATATTACCAGAAATCGTAAGCACCGTTTTACAGTGTAGGTCGGGCATGTTAAGAAGAAAAGGGAAGATCAGAAACAGTGAGGTGAAGAAGGAAGAAACCTGGTTGTTGTTCCAAGGGGTTGATATGGAAGATAAAGAGAAAATAGCCAGAGAAGTGGGAAGGTTAGTTTTTGGGTCCCATAGCAGTCTGGTTTCAATAGCCTTGAGCAGTTTTTCATCAACAAGAGCAGATTCAACGGAGGATTGCAGAAACAAAAGATCAAGAGACGAACAAAGTTACAGTTACATTGAGAGATTCGGAGACGCAGTTTCTAGCAATCCTCACAGGGTGTTTCTGCTTGAAGACATAGAGCAAGCGGATTATTGTTCTCAACTGAGTTTTAAAAGGGCTATTGAAACAGGACTAGTGGCAGATTCAAATGGTAAACAAGTTAGCCTTTGTGATGCCATCATCATTCTCAACTGTGAAAGTTTCAGTTCAAGGTCAAGAGCGTGCTCTCCACTGCTTAAGCACAAATCATCTCAAGAAGAGAAAAATGATATCGCTACAATGGGGGAGACAAGCCCTTGTTTGTCTTTGGATTTGAATATTTCCATTGATTACGACTGCGATAAATATCAGTCACTAGATGACATTGGGCTTCTTGAATCCGTAGACAGACGAATTATCTTCAAAATTCAGGAATTGTGA 2427 0.4524 MRTGSCAVQQGLTTEAANIVKQAVTLAKRRGHAQVTPLHVANTMLVATNGLLRMACLQSHSHPLQCKALELCFNVALNRLPASNSSPIFSSRSYSPSISNALVAAFKRAQAHQRRGSVENQQQPLLAVKIELEQLTISILDDPSVSRVMKEAGFSSTQVKSNVEQALSLEIYSQNTPLSSKSKENNNQPAIRAEDITSVIDNLKNQRRRSTVIVGECLVSLEGIVRGVMDKVDKGDVDEALKDVKFISLSASAFGHVSEVEVEHKIEELRSLARNCHNRGFILYLGDLKWVFEYRARSSQQGRRYYCPVEHMIMEVGKLVSGFGENGRFTVLGIASFQTYMRCKDGHPSLETIWGLHPLTIPAASLRLSLITDSDSGLQNESAKKKADNGTTWLLLERGEEKQTACFAEPWAKLEPEVRSLQSISTCNSDSSTSLPAWLQQYKHENRGTSNDQKRVPVGELCQKWNSVCSSVQKQPYPSERTLVFSSVSPCSSTSGSSYNPGHPNLHQSHPLWIPKSGNKPNEPTLRMYIQPFPSSNPNSTSSSNFMETEYVSKFKELNSENLKTLCNALEEKVPRQKDILPEIVSTVLQCRSGMLRRKGKIRNSEVKKEETWLLFQGVDMEDKEKIAREVGRLVFGSHSSLVSIALSSFSSTRADSTEDCRNKRSRDEQSYSYIERFGDAVSSNPHRVFLLEDIEQADYCSQLSFKRAIETGLVADSNGKQVSLCDAIIILNCESFSSRSRACSPLLKHKSSQEEKNDIATMGETSPCLSLDLNISIDYDCDKYQSLDDIGLLESVDRRIIFKIQEL 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1176 808 Gene3D - 9 168 IPR036628 -
Glsi11g1176 808 Gene3D - 172 354 IPR027417 -
Glsi11g1176 808 Pfam Clp amino terminal domain, pathogenicity island component 23 41 IPR004176 -
Glsi11g1176 808 Pfam Clp amino terminal domain, pathogenicity island component 130 167 IPR004176 -
Glsi11g1176 808 ProSiteProfiles Clp repeat (R) domain profile. 8 170 IPR004176 -
Glsi11g1176 808 Gene3D - 542 767 IPR027417 -
Glsi11g1176 808 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 804 - -
Glsi11g1176 808 SUPERFAMILY Double Clp-N motif 12 161 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1176 Glsi-ChrGlsi11 7364678 7367774 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g1176 11 7364678 7367774 Glsi10g1566 10 10460018 10464578 ECH
Glsi11g1176 11 7364678 7367774 Glsi11g1176 11 7364678 7367774 ECH
Glsi11g1176 11 7364678 7367774 Glsi08g0349 08 3052588 3057760 ECH
Glsi11g1176 11 7364678 7367774 Glsi10g2804 10 51316381 51320093 ECH