Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1566 ATGCCTACGCCGGTCGGAGTAGCTAGACAATGCTTGACACCGGATGCAGCTCAAGCTCTCGACGAGGCCGTCTCCGTGGCGCGTCGCCGTGGACATGGCCAGACCACCTCACTCCATGCTGTCTCCGCCCTCCTCTCTCTGCCCTCGTCTATCTTACGTGAAGCCTGTGCACGTGCCCGGAACACTGCTTACGCGCCTCGGCTTCAATTTAAGGCGCTAGAGCTGTGCCTGAGCGTGTCGCTAGACCGGGTCCCCTCGACCCAACTCACCGAGGACCCGCCCGTGTCCAACTCGCTCATGGCCGCCGTTAAGCGCTCCCAGGCTAACCAGAGAAGACAGCCGGATAGTTTCCATCTCTACCATCAATTCTCGCAGCAACCCTCTTCGGTTTCGTGTGTGAAGGTCGAACTTCAGCATTTGGTCTTGTCGATTCTCGACGACCCGGTTGTAAGCCGAGTATTTGGCGAAGCGGGTTTTCGGAGCTCTGAAATTAAGCTCGCAATTCTTCGTCCTCTTCCACAGCTCCTCAGGTACTCGCGCTCCAGAGGTCCCCCTATATTCCTGTGCAACTTGACGGAGCACCCGGACCCTGGTCGCCGGAACTTCAGCTTTCCATTTTCTGGGTCTTCAGGGAGCTGCGACGGGGACGAGAATTACAGAAGAATCGGTGATGTGCTTTCCAGGAGCAGAGGCAGAAATCCTCTGCTTCTGGGTGTATGCGCATATGATGCTTTGCGGAGTTTCACAGAAGCTGTTGATAAACGAAAAGACGGTGCTTTGCCAGTGGAGTTATCTGGATTGAATGTAATATGCATAGAGAAAGATCTTTCCAACTATATTTTTGAGAATTGTGATAAGGAGACTATGAGTTCGAGGTTTAAGGAGATTGCTCAAATGGTTGAGAGGTGTGTAGAACCTGGTTTGGTGGTCAATTTTGGAGACTTGAAGTCTTTCGTTGATGAGAAAGAATCAGGTGAAGCAGTGAACTATGTTGTTGCCCAATTGGCCAAGTTGTTGGAGCTTAATTATGGCAGGTTCTGGTTGATGGGTGCTGCGGCGAGCTATGACACCTATCTGAAATTTGTGGGTAGGTTTCCATCTATTGAGAAGGATTGGGACTTGCAGCTTCTACCCATCACATCTATCCGGCCTTCAAAGGGTGAATCATGTCAGAGGCCTAAGTCCAGCTTAATGGACTCATTTGTCCCATTTGGTGGCTTTTTCCCTTCACCTTCTGACATGAAAGGTCCACTAAATGGCTCGTATTATTGTGTTCCCCACTGCCATCAATGTGGTGAAAGGAGTGAACAAGAAGTTCTTGCTGCTTCAAAGGAAAGTTTTTCTGCTTCAGCTGCTGATCTTCACCAATCTAACTTACCTCCATGGTTGCAGATTGCCGAGCTTGGCACCAAAAAAGGGTTGAATGTTAAGACCAAAGATGATGGTGTTCTACTGGATACATGTGAATCTGGGCCGCATAAGAAAGTGGACAAGACATGCCAGCATCTGCATCATACTCAGCAATCCCCTGAAGCAATTACTTGTCCAACTTTTGTGAGTTCTAACGACAAAAAGGAAGATGTTGACAACAAAAGCAGCAAAGTTACAGATGCCTCAACAAGTGAATACATCGATCTCAATTCAGACATGCCCATGGGTGTGCAGATGATTTCTACGTCACAATCAAGCTGTCCTTTTCCAGTGGTTTCCAAGGAAAAGCACTGGAAACATACTTCTAAAATTTCAGAGTCAGGTGACTTAAGATCATGCAACATGTCCAATTCAAGTGTGTGTGACGGCAATCAACTGTCTCCTACATCTGTGACTTCTGTAATCACAGATCTAGGAATAGGAATTTGCTCTTCTCCTACCAGCAATAGATCTAAGAAACTCGCTATGGAGCGTCCAAAGGAAATTGCTAGTCCTTTCTCTTCAAACTTTGGTTCAGTTGACAGGGATATCTTTAAGCATCCAGCTCAGTCTTCATGTTGCTTTAGTTCTGATTATAGTGGACAATTTGATCTAAGAAATCCCAAAGTTCTTTTCGAAGCTCTTGCCAAAAAGGTTAGCTGGCAAGATGAAGCCTTACGGAGCATCGTAAAAGCAATATCTCGCTGCGAAACGAGAAGGGGCAAACACCAAGGCATAAATAAGCGAGGGGACATATGGATGAATTTTGTAGGGCCCAATAGGGTTGGTAAGAGGAAAATTGCTGTTTATCTGGCTGAGATTTTGTATGGAAGCCGGGAAAGCTTTATTTTTATGGATCTAAATTCTGAAGAAATAAAAGGACATGATGTGAGATTCAGAGGGAAGACTATCCTTGATTTCTTAGTTGGGGAGTTGAGCAAAAAGCCCTTGTCTGTGGTTTTCCTAGAAAATGTAGATAAGGCTGATATACTGGCTCAAAATAGTTTATCTCAAGCGATGAAGACTGGAAAATTTACAGACTCTCATGGAAGAGAAGTTGGTGTAAACAATGCAATATTTGTGACATCTTTCTCAGTTCAAAATAATTGCACGCCAATGAGGGAACCCTCCATCTATTCTGAGGAAAGAATATTGAGGATAAAAGGGGTAGCCATCAAGATAAAAGTTGAACATTTGATTGGAGACATCAGAAGTCAAGGCGTTGCTGTAGTTAACAGTTCAACGGAGGGCATTCCGAAGCTAAACTTGGTACATAAAAGAAAACTGAGCGGTGAAAATGGCTTTCATGATCAGCACAAAATCTCAGACCCTGCTAAAAGGTCTCACAAAACTTCAAATTGGATTTTAGATTTGAATCTTCCAGCCGAAGAGAATGAACTGCAAAATATGAGTGATGGAAACTCTGAAGAAGTCTCAACTGAGATCTTAAACCCTTGGTTGCAAGATTGGTGTAAACAGGTTGATGAAACAGTTGTTTTCAAACCATATAATTTCGATGCACTTGCAGATAGACTGTTGAAAGTGATCAGAATGAGCTTCCACCAAATTCTTGGACCTGAGTGTTCTGTACATATTGATTCAAAAGTGATGGAACAGTTACTTGCAGCTGCATATGTCTCAGAGGGGGACATAGAACTGGAGGATTGGGTGGAGCAAGTTCTGAGTGGAGGATTTACAGAAATAAAGAGAAGGTACAGCCTCCCTGCTCGTTCTATTGTGAAACTTTCTACATGTCAGGAACAAGTTCCCTCAAGGATAATTATAGACTGA 3201 0.448 MPTPVGVARQCLTPDAAQALDEAVSVARRRGHGQTTSLHAVSALLSLPSSILREACARARNTAYAPRLQFKALELCLSVSLDRVPSTQLTEDPPVSNSLMAAVKRSQANQRRQPDSFHLYHQFSQQPSSVSCVKVELQHLVLSILDDPVVSRVFGEAGFRSSEIKLAILRPLPQLLRYSRSRGPPIFLCNLTEHPDPGRRNFSFPFSGSSGSCDGDENYRRIGDVLSRSRGRNPLLLGVCAYDALRSFTEAVDKRKDGALPVELSGLNVICIEKDLSNYIFENCDKETMSSRFKEIAQMVERCVEPGLVVNFGDLKSFVDEKESGEAVNYVVAQLAKLLELNYGRFWLMGAAASYDTYLKFVGRFPSIEKDWDLQLLPITSIRPSKGESCQRPKSSLMDSFVPFGGFFPSPSDMKGPLNGSYYCVPHCHQCGERSEQEVLAASKESFSASAADLHQSNLPPWLQIAELGTKKGLNVKTKDDGVLLDTCESGPHKKVDKTCQHLHHTQQSPEAITCPTFVSSNDKKEDVDNKSSKVTDASTSEYIDLNSDMPMGVQMISTSQSSCPFPVVSKEKHWKHTSKISESGDLRSCNMSNSSVCDGNQLSPTSVTSVITDLGIGICSSPTSNRSKKLAMERPKEIASPFSSNFGSVDRDIFKHPAQSSCCFSSDYSGQFDLRNPKVLFEALAKKVSWQDEALRSIVKAISRCETRRGKHQGINKRGDIWMNFVGPNRVGKRKIAVYLAEILYGSRESFIFMDLNSEEIKGHDVRFRGKTILDFLVGELSKKPLSVVFLENVDKADILAQNSLSQAMKTGKFTDSHGREVGVNNAIFVTSFSVQNNCTPMREPSIYSEERILRIKGVAIKIKVEHLIGDIRSQGVAVVNSSTEGIPKLNLVHKRKLSGENGFHDQHKISDPAKRSHKTSNWILDLNLPAEENELQNMSDGNSEEVSTEILNPWLQDWCKQVDETVVFKPYNFDALADRLLKVIRMSFHQILGPECSVHIDSKVMEQLLAAAYVSEGDIELEDWVEQVLSGGFTEIKRRYSLPARSIVKLSTCQEQVPSRIIID 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1566 1066 CDD RecA-like_ClpB_Hsp104-like 679 833 - -
Glsi10g1566 1066 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 3 1038 - -
Glsi10g1566 1066 Gene3D - 10 170 IPR036628 -
Glsi10g1566 1066 Gene3D - 666 857 IPR027417 -
Glsi10g1566 1066 SUPERFAMILY Double Clp-N motif 12 117 IPR036628 -
Glsi10g1566 1066 ProSiteProfiles Clp repeat (R) domain profile. 8 174 IPR004176 -
Glsi10g1566 1066 Pfam Clp amino terminal domain, pathogenicity island component 135 169 IPR004176 -
Glsi10g1566 1066 Pfam Clp amino terminal domain, pathogenicity island component 23 54 IPR004176 -
Glsi10g1566 1066 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 681 1015 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1566 Glsi-ChrGlsi10 10460018 10464578 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1566 10 10460018 10464578 Glsi10g1566 10 10460018 10464578 CCT
Glsi10g1566 10 10460018 10464578 Glsi10g1566 10 10460018 10464578 ECH
Glsi11g1176 11 7364678 7367774 Glsi10g1566 10 10460018 10464578 ECH
Glsi08g0349 08 3052588 3057760 Glsi10g1566 10 10460018 10464578 ECH
Glsi10g2804 10 51316381 51320093 Glsi10g1566 10 10460018 10464578 ECH
Glsi10g1566 10 10460018 10464578 Glsi08g0349 08 3052588 3057760 ECH
Glsi10g1566 10 10460018 10464578 Glsi10g2804 10 51316381 51320093 ECH