Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0349 ATGCCAACGCCGGTCAGCGCAGCGAGGCAATGCTTGACGGAGGAGGCCGCACGTGCTCTTGACGATGCAGTGGCGGTTGCTCGGCGCCGCAACCATGCGCAGACCACGTCGCTTCATGCTGTCTCTGCCTTGCTCGCCTTGCCTTCATCTACCCTCCGGGACGCTTGCACACGCGCACGTAGCTGCTCATATCCTCCGCGTCTCCAGTTCCGGGCTTTGGAGCTCTCCGTGGGTGTGTCTCTCGATCGATTGCCCACCTCTAAGACCCTTGAGGATGACCCTCCTATATCCAATTCGCTCATGGCCGCTATCAAGCGATCCCAAGCGAACCAGAGGAGGCACCCAGAGAGCTTCCATTTGCTTCAGATGCATAGTCAGCAGCAGCAAGCCGCGTCGTTCTTGAAGGTGGAGCTCAAGCACTTCATACTATCGATACTCGATGATCCGATTGTAAGCAGGGTTTTCGGGGAAGCGAATTTTCGAAGCTATGACATCAAACTTGCGTTGCTTCAACCGCCTTTAGCGCAAGCTTCTCGATTCTCCCGGAGCCGGTGCCCACCGATATTTTTGTGCAATCTGACGAGCTCGGAAATGGATCGTCCGGGTTTCAACTTTCCTTTCATGGGCAATCCTGGGTACGAAGGTGTAGATGCGAATTGTAGAAGAATAGCAGAAGTTCTTTTGAGGGAGAGTAAGAAAAATCCCTTATTGATGGGTGTTTACGCGAGGAGTGCTCTTCGGAGTTTCACAGAGACAGTACAGAGAAGTCAACCGGGTGCGTTGCCGGTTGAAATTGCTGGACTGAATATAATCTGCATTGAGAAGGAGATTGCTGAGTTTTTTGTTGAAGGGGGAAGTGAAGAGAAGATGGTTTTGAAATTCAAGGAACTGAGCCGTGCTGTGGAGCAATGCTCGGGTCCAGGTATCGCCGTGAACTTCGGAGACCTCGAGGCATTTGTCGGTCATAGTGTGGCTGTTTCAGCTGTCAGATTGGTTGTCTCACAATTGACAGGCTTATTGGAGATCTATGGTGGGAAATTTTGGTTGGTGGGCATGGCAGGAACCTCTGATGTCTATACTAAGTTTTTAGCTTTGTTCCCAACTATCGATAAGGATTGGGATCTGCATCTGCTGACCATGACATCTGCCACCCCTTCAATTGAAGCCTCTAAATCCAGCTTGATGGGGTCCTTTGTGCCATTTGGTGGTTTCTTTTCTTCACCTTCTGAATTCAAACAACCAGTAAGCTGTACAAATCAATCTTCTACTCGTTGTCACGCGTGCAATGAAAAATATGATCAAGAAGTTGCTGATATGCTAAAGGTAAGTCCTGCAACTTGGGCTTCTGGTCACTCAACAAGCTTGCCTTGGTTGCAAAAGGTTAATGTGGATACAGATAAACGATTGGATGTTGCAAAGACTAATGAAGAATTCACGAGTTTGAATGCTACTATCTTGGGATTGCAAAAGAAATGGAGTGATATGTGTCAACGTCTTCATCACACTCGATCATTACCTGAAATTGATATATCCCAAAAAAGTTTTCAAGTTCCCTCTCTTGAGGGCTTTCGATTTGGGTCGAGTTTTAAGGAAAGCAGCAGTAAAGATCTTTCACCTGATGAAACCCAATATTCTAATCATAATCCCTGCATGCCTAAGGAGATACGGAGTATTTACCCATCGAAACAGATATTACAAGTTTCAGTACCTTCTGATACTGTTTGTCTTACTACCGGAACTGACCAGGTAGCAAAAGTTTTGAGGAGTCACCAAACTGACGTGCGGAACCCCTGGGTTTCCTCTTCGCCTATTGCCACTATGAGTTTGGTTGACCACAGATCATCTTCACCCCTTACTTCTGTGACCACAGATTTGGGATTGGGAATGCTATATACATCATCTGCTCAGGAGCCAAATACTCCAAAGTTACGAGATCATAGAGAGAGTCTTCAGCACCAGTCAGACTCCCTTTCTACTGATTTTGATGCTATGAATGAAAATACTTCACGCCAAATTGCTCGATCTTCTTCTTGCTCTGGTCCCAATTTGGACTGGAAATTTGATTCAGTAGATTTCAAGTCATTTAATGCACTTCTTACCGAACGGGTTGGCTGGCAAGATGAGGCCATATGTGCTATCAATCGAACTTTGTCCCTTTCTAGATCTGGCGCTGGAAAGCATAGTGGCTCACATGCTAGAGCAGACATATGGCTTGCTTTCCTTGGACCTGATAAAGTTGCAAAGAAGAAAATCGCTTCAGCACTTGCAGAGATCATATTTGGAAACGCAGAAAGCCTAATATCTGTGGATTTGAGCTCCCAGGACAGGGGCTATCCATTGAACTCGATTTTCGAATGCCAAAAATCATTTGGTTATGATGTGTTTAGGAGGAAAACAGTTGAGGACTATATTGCTGGGGAGTTGAGTAAACAACCCCATTCAGTTGTCTTTCTTGAAAATGTAGATAAAGCTGATTTTCTGGTGCAGACTAGTTTGCTCCAGGCAATAAGAACGGGTAAATTTCCAGACTCCCATGGAAGGGAAATCAGCATCACTAACACAATTTTTATTGTAACCTCAACCATATCTAAAGGTGATGATGGCTCTTTCCTTTTGGAGAAGGAGCTTATGTTTTCTGAGGAAAGAATCCTTGAAGCCAAAAGATGTCAGATGCAGTTATCACTTGGACATATTTCTGAGGATTCCAAAAGAAGTGGTGGCACAAATGTCACGGTAACACTGAGAAAAGGGACCTCCGAACCAACAATTCCAAATAAAAGAAAGCTGATCGAAAGAAGTGATTCCATAGAGCAAACAACAACATGCAAGATACAGAAACAGGTCCTAGAGGCATCAAGATCCAATCTGGATTTGAACATGCCTCTCCAGGAGGTAGAAGAGGACTGGCTAGATGGTTTCTGTGGACATGTTGATGAAAAAGTGGCTTTTAAGCCATTCAATTTTGATGCGCTTGCTGAGAAAATCTTAAAAAGAATTAGCATACAATTTCAAAGGACTTTTGGATCAGGGTTTCTGCTAGAAATTGATTATGAAGTCATGGTACAGATACTAGCAGCTGCTTGGATATCCGACAAGAAAAATGCCGTGGAGGATTGGATTGAAAATGTACTTGACCGAAGCTTCAATGAAGCCCAGCAGAAATACCACCCTGCAAATCAGCATTTCTTGAAACTCGTTGCCTGTGAAGGCGTTTTTGTGAAAGAGCAAGCTCCTGGAACATGCCTTCCAGCTAAAATTAACCTAAACTAA 3270 0.4483 MPTPVSAARQCLTEEAARALDDAVAVARRRNHAQTTSLHAVSALLALPSSTLRDACTRARSCSYPPRLQFRALELSVGVSLDRLPTSKTLEDDPPISNSLMAAIKRSQANQRRHPESFHLLQMHSQQQQAASFLKVELKHFILSILDDPIVSRVFGEANFRSYDIKLALLQPPLAQASRFSRSRCPPIFLCNLTSSEMDRPGFNFPFMGNPGYEGVDANCRRIAEVLLRESKKNPLLMGVYARSALRSFTETVQRSQPGALPVEIAGLNIICIEKEIAEFFVEGGSEEKMVLKFKELSRAVEQCSGPGIAVNFGDLEAFVGHSVAVSAVRLVVSQLTGLLEIYGGKFWLVGMAGTSDVYTKFLALFPTIDKDWDLHLLTMTSATPSIEASKSSLMGSFVPFGGFFSSPSEFKQPVSCTNQSSTRCHACNEKYDQEVADMLKVSPATWASGHSTSLPWLQKVNVDTDKRLDVAKTNEEFTSLNATILGLQKKWSDMCQRLHHTRSLPEIDISQKSFQVPSLEGFRFGSSFKESSSKDLSPDETQYSNHNPCMPKEIRSIYPSKQILQVSVPSDTVCLTTGTDQVAKVLRSHQTDVRNPWVSSSPIATMSLVDHRSSSPLTSVTTDLGLGMLYTSSAQEPNTPKLRDHRESLQHQSDSLSTDFDAMNENTSRQIARSSSCSGPNLDWKFDSVDFKSFNALLTERVGWQDEAICAINRTLSLSRSGAGKHSGSHARADIWLAFLGPDKVAKKKIASALAEIIFGNAESLISVDLSSQDRGYPLNSIFECQKSFGYDVFRRKTVEDYIAGELSKQPHSVVFLENVDKADFLVQTSLLQAIRTGKFPDSHGREISITNTIFIVTSTISKGDDGSFLLEKELMFSEERILEAKRCQMQLSLGHISEDSKRSGGTNVTVTLRKGTSEPTIPNKRKLIERSDSIEQTTTCKIQKQVLEASRSNLDLNMPLQEVEEDWLDGFCGHVDEKVAFKPFNFDALAEKILKRISIQFQRTFGSGFLLEIDYEVMVQILAAAWISDKKNAVEDWIENVLDRSFNEAQQKYHPANQHFLKLVACEGVFVKEQAPGTCLPAKINLN 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0349 1089 Gene3D - 681 985 IPR027417 -
Glsi08g0349 1089 ProSiteProfiles Clp repeat (R) domain profile. 8 181 IPR004176 -
Glsi08g0349 1089 MobiDBLite consensus disorder prediction 530 549 - -
Glsi08g0349 1089 Gene3D - 10 172 IPR036628 -
Glsi08g0349 1089 CDD RecA-like_ClpB_Hsp104-like 691 860 - -
Glsi08g0349 1089 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1054 - -
Glsi08g0349 1089 Pfam AAA domain (Cdc48 subfamily) 738 863 IPR003959 GO:0005524|GO:0016887
Glsi08g0349 1089 SUPERFAMILY Double Clp-N motif 12 118 IPR036628 -
Glsi08g0349 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 685 1026 IPR027417 -
Glsi08g0349 1089 MobiDBLite consensus disorder prediction 634 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0349 Glsi-ChrGlsi08 3052588 3057760 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0349 08 3052588 3057760 Glsi10g2804 10 51316381 51320093 CCT
Glsi08g0349 08 3052588 3057760 Glsi08g0349 08 3052588 3057760 ECH
Glsi08g0349 08 3052588 3057760 Glsi10g1566 10 10460018 10464578 ECH
Glsi08g0349 08 3052588 3057760 Glsi10g2804 10 51316381 51320093 ECH
Glsi10g1566 10 10460018 10464578 Glsi08g0349 08 3052588 3057760 ECH
Glsi11g1176 11 7364678 7367774 Glsi08g0349 08 3052588 3057760 ECH