Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0893 ATGCCGACGGCGGTCGGATTAGCCAGGCAATGCTTGACGCCAGATGCAGCTCGCGCTCTCGACGAAGCCGTCTCCGTCGCGCGCCGCCGTGGGCACCCTCAGATCACCTCACTCCATGCCGTCTCCGCTCTGCTTTCGTTGCCGTCATCTATCCTACGTGACGCCTGTGCGCGTGCCCGGAACTCTGCCTACTCTCATCGGCTTCAATTCAAGGCGCTAGAGCTCTGCCTGAGCGTGTCACTCGATCGGGTCCCCTCGACCCAACTCACCGCCGACCCGCCCGTCTCGAACTCGCTCATGGCAGCAATTAAGCGCTCTCAGGCGAACCAGAGAAGGCAGCCCGAGAGTTTCCATCTCTACAATCAATACTCGCAGCAGCCCACTTCGGTTTCGTGTGTGAAGGTCGAGCTTCAGCATTTGATCTTGTCGGTTCTGGACGACCCGGTCGTGAGCCGACTATTCGGCGAAGCGGGTTTTCGGAGCTCCGAAATTAAGCTTGCTATTCTTCGACCTCTTCCACAGCTTCTCAGTTACCCGCGCTCCAGGGGCCCCCCTATATTCCTTTGCAATGTGACGGAGCATCCCGACCCGGGTCGTCGGAGCTTCAGCTTTCCGTTTTCTGGGTCTTCCGGAGCCTGGGACGGCGACGAGAACTACAGAAGAATCGGGGATGTGCTTTCCAGGAGCAGAGGCAGGAATCCTCTGCTTCTGGGTGTATGCGCATATGATGTTCTTCATAGTTTCAGTGAAGCTATTGTTAAACAAAAAGACGGTGCTTTGCCTGTGGAGTTATGTGGATTGCGTGTGATATGCATAGGAAAAGATGTTTCCAAGTTTGTCTTTGAGAATTGTGATAACGAGACTATGAGTTTGAGGTTTAAGGAGATTGCTCAAATGGTAGAGCAGTGTGCAGGACCTGGTTTGGTGGTGAATTTTGGAGACTTGAAGTCTTTGGTTGATGAGAATGCCTCAGGTGAAGCAGTGAACTATATTGCTGCCCAATTAGCGAAGTTGTTAGAGCTTAATTATGGCAAGTTTTGGTTGATGGGTGCTGCGGCGAGCTATGAGAGCTATCTGAAATTCGTGGGAAGGTTTCCTTCTATTGAAAAGGATTGGGACTTGCAACTACTGCCCATCACGTCTATTCGGCCTCAGGGTGAATCGTATCGGAAGCCTAGGTCCAGCTTAATGGATTCATTTGTCCCATTTGGAGGCTTGTTTTCTTCACCTTCTGACATGAATGGTCCACAACATGGCTCATATTATTGTGATCCCCACTGCCATCAATGCGGTGAAAGGTGTGAACAAGAAGTGCTTCCTGCTTCGACGGAAAGATTTTCTGCTTCAGCTGCTGATTCGTACCAATCTAATTTACCTCCATGGTTACAGACTGCCAAGCTTGGCACAATAAAAGGGTTGAGTACTGGGACCAAAGAAGATGGTGTTCTGCTGGATTCTAGTGAATCTGGGCCACTTAAGAAATTGGATAATACATGCCAGCATCTGCATTATCCGCAGCAATTCCCCGAAGCAATTCCTTGTCAAACTGTTCTGAGTTCTCAATGTTCTGAGGGCAAAAAGGAAGATGCTGATAACCATAGCAGCAAAATTACAGATGCATCACCGAGTGAATACGTCAATCTCAATTCAAGCATGCACATTGGTGAGCAGATGATTTCTACATCACAATCAAGCTGTCCTTTTCCTGTGGTTTCCAAACCAAAGCAGGAGAAACATAGTTCTAGAGCTTCAGAGACGTTCCACAAACTGAAAGATCTTGAGTCAGGTGACTTGAGATCATGCAACATGTCCAATTCAAGTGTGTTTGATGGTAGTCAGTTGTCTCCCGCATCTGTGACTTCTGTAACCACGGATCTGGGTATAGGAATTTGCTCTTCTCCTACCAGCAACAAATCTGATAAACCTACAGGTCGACATCCTATGGAGCTTCCAAAGGAAATTGCAGGTTCCCTCTCTTCAAACATTGATTTAGTTAACAGCAATCTCTTTAAACATCCAGCCCATTCTTCATCGTGCTTAAGTTCTGATCATTCTGGACAATATGACCTGAGAAATCACAAAATTCTTTTTGAAGCTCTTGCCAAAAAGGTAAGCTGGCGAGATGAAGCCTTACACAGCATCATAAAAACGATAGCCTACTGTGAAACAAGAAGGGGCAAACACCAAGGGGCAAATCAAAGAGGGGGCATATGGATGAATTTTGTGGGACCTGATAGGATTGGTAAGAAGAAAATTGCTGTTTCTCTGGCTGAGATTTTGTATGGAAACCAGGAAAGCTTTATTTTCGTGGATCTAAATTCAGAAGAAATAAATGGACATGATATGAAATACAGAGGGAAGACTGTACTTGACTTTTTAGTCAGGGAGTTGTGCAAAAATCCCTTGTCTGTGATTTTCCTTGAAAATGTAGACAAGGCTGATATGCTGGCACAAAATAATTTATCTGAAGCTATCAAGACTGGAAAAATTACAGACTCGAATGGAAGAGAAGTTGGTGTAAACAATGCCATATTTTTGACGTCTTTCTCAGTTCAACAAGATAATTCCACGCCAAAGAGGAAATACTCCAACTACTCTGAGGAAAGAATATCAAGGACAAAAGGGGTACCGATCAAGATAAAAGTTGAACATGTAATTGGAGACATCAGAAATCCAAGCTTCGATGCAGTTAAGAGTTCAACAGAGGCCGTTCCCAATCCAATCTTTGTAAATAAAAGAAAGTTGAGTGGTGACAATGGCCTTCATGCTCAGCACAAAATCTCAGAAACGGCTAAAAGGGCTCACAAAACATCAAATTGGCTTTTAGATTTGAACCTCCCAGCTGAAGAGAATGAACTGCAACCTGTGGATGATGGAAAATATGAAGATATCTCAACTGAGACAGAAAACCCTTGGTTGCAAGATTTGTATAAACTGGTTGATGAAACTGTCATTTTTAAACCATATAATTTTGATGCACTTGCAGAAAGAGTGTTAAAAGTTATCAGAAGGAGTCTCCACAAAATTCTTGGATCCAAGTGTTCACTACAGATAGAGTCAGAAGTCATGGAACAGTTACTTGCAGCTGCGTATGTCTCAGAAGGGGACGTTGAAGTGGAAAATTGGGTGGAGCAAGTTCTCTGTGGAGCATTTAGAGAGATACGGAGAAGGTACAGCCTCCCTACCTATTCTATTGTGAAACTTACTGCGTGTCAGGGGCAAGCTCAAGGTGCAGACCTTCTTCCCCCAGGGATAATTGTTGACTGA 3267 0.4539 MPTAVGLARQCLTPDAARALDEAVSVARRRGHPQITSLHAVSALLSLPSSILRDACARARNSAYSHRLQFKALELCLSVSLDRVPSTQLTADPPVSNSLMAAIKRSQANQRRQPESFHLYNQYSQQPTSVSCVKVELQHLILSVLDDPVVSRLFGEAGFRSSEIKLAILRPLPQLLSYPRSRGPPIFLCNVTEHPDPGRRSFSFPFSGSSGAWDGDENYRRIGDVLSRSRGRNPLLLGVCAYDVLHSFSEAIVKQKDGALPVELCGLRVICIGKDVSKFVFENCDNETMSLRFKEIAQMVEQCAGPGLVVNFGDLKSLVDENASGEAVNYIAAQLAKLLELNYGKFWLMGAAASYESYLKFVGRFPSIEKDWDLQLLPITSIRPQGESYRKPRSSLMDSFVPFGGLFSSPSDMNGPQHGSYYCDPHCHQCGERCEQEVLPASTERFSASAADSYQSNLPPWLQTAKLGTIKGLSTGTKEDGVLLDSSESGPLKKLDNTCQHLHYPQQFPEAIPCQTVLSSQCSEGKKEDADNHSSKITDASPSEYVNLNSSMHIGEQMISTSQSSCPFPVVSKPKQEKHSSRASETFHKLKDLESGDLRSCNMSNSSVFDGSQLSPASVTSVTTDLGIGICSSPTSNKSDKPTGRHPMELPKEIAGSLSSNIDLVNSNLFKHPAHSSSCLSSDHSGQYDLRNHKILFEALAKKVSWRDEALHSIIKTIAYCETRRGKHQGANQRGGIWMNFVGPDRIGKKKIAVSLAEILYGNQESFIFVDLNSEEINGHDMKYRGKTVLDFLVRELCKNPLSVIFLENVDKADMLAQNNLSEAIKTGKITDSNGREVGVNNAIFLTSFSVQQDNSTPKRKYSNYSEERISRTKGVPIKIKVEHVIGDIRNPSFDAVKSSTEAVPNPIFVNKRKLSGDNGLHAQHKISETAKRAHKTSNWLLDLNLPAEENELQPVDDGKYEDISTETENPWLQDLYKLVDETVIFKPYNFDALAERVLKVIRRSLHKILGSKCSLQIESEVMEQLLAAAYVSEGDVEVENWVEQVLCGAFREIRRRYSLPTYSIVKLTACQGQAQGADLLPPGIIVD 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0893 1088 SUPERFAMILY Double Clp-N motif 12 116 IPR036628 -
Dere05g0893 1088 Gene3D - 10 170 IPR036628 -
Dere05g0893 1088 Gene3D - 675 892 IPR027417 -
Dere05g0893 1088 ProSiteProfiles Clp repeat (R) domain profile. 8 174 IPR004176 -
Dere05g0893 1088 MobiDBLite consensus disorder prediction 565 585 - -
Dere05g0893 1088 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 697 1062 IPR027417 -
Dere05g0893 1088 Pfam Clp amino terminal domain, pathogenicity island component 23 54 IPR004176 -
Dere05g0893 1088 Pfam Clp amino terminal domain, pathogenicity island component 135 169 IPR004176 -
Dere05g0893 1088 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 7 1051 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0893 Dere-ChrDere05 14592928 14597851 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g0893 05 14592928 14597851 Dere05g0893 05 14592928 14597851 CCT
Dere05g0893 05 14592928 14597851 Dere05g0893 05 14592928 14597851 ECH
Dere02g1239 02 11871559 11874755 Dere05g0893 05 14592928 14597851 ECH
Dere04g1850 04 21189201 21194072 Dere05g0893 05 14592928 14597851 ECH
Dere05g0132 05 1741681 1746223 Dere05g0893 05 14592928 14597851 ECH
Dere05g0893 05 14592928 14597851 Dere04g1850 04 21189201 21194072 ECH
Dere05g0893 05 14592928 14597851 Dere05g0132 05 1741681 1746223 ECH