Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g1850 ATGCCGACGCCGGTCAGCACAGCAAGGCAATGCTTGACGGAGGAGGCGGCGCGTGCACTGGACGATGCGGTGGCGGTTGCTCGCCGCCGTAACCATGCGCAGACAACTTCGCTTCATGCTGTCTCTGCCTTGCTCGCCTTGCCTTCTTCCACCCTCCGGGACGCTTGCACACGCACGCGTAGCTGCTCCTATTCTCCGCGTCTCCAGTTCAAAGCGTTGGAGCTCTCAGTGGGTGTGTCTCTCGACCGATTGCCCACCACCAAAGCCCTCGAGGGCGACCCTCCTATATCCAACTCACTCATGGCCGCTATCAAGCGATCCCAAGCGAACCAGAGGAGGCATCCTGAGAGCTTCCATTTGCTTCAGATGCATAGTCAGCAACAGCAAGCGGCCTCGTTTTTGAAGGTGGAGCTTAAGCACTTTATCCTTTCGATTCTCGATGATCCGATTGTGAGCAGAGTTTTCGGGGATGCTGGTTTTCGAAGCTGTGACATCAAGCTTGCGTTGCTTCAACCGCCTTTGGCGCAAGCGTCCTCTCGATTCTTCCGGAGCCGTTACTCATCCATTTTTATGTGCAATCTGACAGGTTCGGAGATGGATCGTCCAAGTTTCAACTTCCCTTTCATGGGCAATCCGGGATACGAAGAAGTAGATGAGAATTGTAGAAGAATTGCTGAGGTTCTTGTGAGAAAGACTAAGAAAAATCCCTTACTGATGGGTGTTTACGCGAAGGGTGCTCTCAGGAGTTTCACAGAGACTGTACAGAGAGGTCGAGCGGGTATGTTGCCGGTTGAAATTGCTGGGCTGAATATAAGTTGCATTGAGAAGGAGATTGCTGAGTTCTTTGTTGAAGGTGGGAGTGAAGAGAAGATGGGTTTGAAATTTAAGGATTTGAGTCGTGCTGTGGAACAATGCTCGGGTCCCGGTATCGCTGTGAACTTTGGAGAGCTTGAGGCATTCGTGGGGGATGGTGTGCCTGGTGCTGCTGTGAATTTTGTTGTCTCGCAATTGACAAGCTTGTTGGAGATTCATGGTGGGAAACTTTGGTTGGTAGGCGTGGCTGGAACTTCTGATATATATTCTAAGTTTTTAGCTATGTTCCCAACTGCTGAAAAGGATTGGGATCTGCATCTGCTGACCATGACATCTGCTACCCCTGCTGTTGAAGGACTCAACTCTAAATCCAGTTTGATGGGGTCCTTTGTGCCATTCGGTGGTTTCTTTTCTACACCTGAATTCAAAATTCCAGTAAGCTGTACAAATCAATCTTCAACACGCTGTCACGCATGCAATGAAAAGTATGAACAAGAAGTTGCTGAAATTTTGAAGGTAGGTCCCGCAACTTCGGCATCTAGTTACTCAACAAGCTTCCCTTGGTTGCAACAGGTTAATGTGGATACAGATAAACGATTGAATGTTGCAAAGACTAATGAAGAATTCACAAGTTTGAATGCTACCATCTTGGGATTGCAAAAGAAATGGGCTGATAATTGTCAACATCTTCATCACCATGGGTCATTGCCTGAATTTAATATATCACAAACAAGGTCTCAAGTTCCTCCTCTCGGGAGCTTACAATTTGGTTTGGGTTTTAGGGAAAGCAGCAGTAAAGATCTATCGCCAGATCAAATCCAATATTCAAATCATTGTCCCTACATGCCTAAAGAGTTACATAGATTACAAGTTTCTTCTGATACTGTTTGTCTTAATACTGGAACTGAGCAGGGAGCAAAAGTTTCGAAGAGTCAGCAAACTGACATGCAGAACCCTTGGGTTGCCCCTTCCTGTGTGGCCAACATGAGTCAGGTTGACCACAGATCATCTTCCTCCCTTATTTCTGTGACCACCGATTTGGGATTGGGAACGCTATATACATCAGCAGCTCAGGAGCCAAATACCCCAAAAGAACGAGATCATAGAGAGAGCCTTCAGCGCTTGTCAGACTCCATTTCAACTGGTTTTGATGCTGTAAATGAAAATACGTCACGCCAAATTGCTCGATCTTCTTCTTGCTCTGGTCCCAGTTTCGAAGGGAAATTGGATTCAGTAGATCTTAAGTCACTTAATCAGCTTCTCACTGAAAGGGTTGGCTGGCAAGATGAGGCCATATATGCTGTCAATCGAACTTTGTCCCTTTGTAGATCTGGTACTGGAAAGCATAGAGGCTCACGTGCTAGAGCAGACATATGGCTTGCTTTCCTTGGACCTGATAGAGTTGGAAAGAAGAAAATCGCTTCAGCACTTGCAGAGATAATATTTGGAAATGCAGAAAGGCTAATCTCTGTGGATTTGAGTTCCCATGACAGAGACTACCCATTAAATACGGTTTTTGAGTGCCAAAATTCATCTTGTTATGATGTGCTTAGAAGGAAGACAATTGTGGATTATATTGCTGGGGAGTTGAGTAAACAACCCCATTCAGTTGTGTTTCTTGAAACTGTGGATAAAGCTGATTTTCTGGTGCAGAATAGCTTGCTCCAGGCAATAAGAACGGGTAAATTTCCAAACTCACATGGCAGGGAAACCAGTGTCAATAACGCAATCTTTATTGTAACCTCAACTGTCTTTAAAGGTGATGGCTCCTTCGTTTTGGAGAAGGAGCATATGTTTTCTGAGGAAAGAATCCTTGGAGCCAAAAGATGTCAGATGCAGTTATTATGCGGACATTTTTCTGATGATGCCATAAGAAGCAGTGGCACAAATGTCAGGATAACACTGAGAAAAGAGACCTCAAAACCAACAGTTCTGAATAAAAGAAAACTGATTGATGGAAGTGACTCCATAGAGCAAGCAACAACATGCAAAGTACAGAAACAGGTCCTAGAGGCATCAAGATCCTATCTGGATTTGAATATGCCTCTCCAGGAGGTAGAAGAGGACTGGTTGGACGATTTTTATGATCAAATTGATGGCAAGGTACCTTTTAAGCCATTCAATTTTGATGCACTTGCTGAGAAGTTGTCAAAAACCATTAGCGTACAGTTTCAAAGGACATTTGGATTGGGTGTTATGCTGGAAATTGATTATGAAGTCATGGTACATATACTAGCAGCTGCTTGGTTATCTGACAAGAAAAATGCAGTGGAAAATTGGATTGAAAATGTACTTGGCAGAAGCTTCAACGAAGCCCTGCAGAAATACCGACCTGAAGCTCCGCATCTCATTAAACTAGTTACCTGTGAAAGCATTTTTGTGGAAGAGCAAGCTCCAGGAGCATGCCTTCCAGCTAATATTAACCTAAACTAA 3246 0.4479 MPTPVSTARQCLTEEAARALDDAVAVARRRNHAQTTSLHAVSALLALPSSTLRDACTRTRSCSYSPRLQFKALELSVGVSLDRLPTTKALEGDPPISNSLMAAIKRSQANQRRHPESFHLLQMHSQQQQAASFLKVELKHFILSILDDPIVSRVFGDAGFRSCDIKLALLQPPLAQASSRFFRSRYSSIFMCNLTGSEMDRPSFNFPFMGNPGYEEVDENCRRIAEVLVRKTKKNPLLMGVYAKGALRSFTETVQRGRAGMLPVEIAGLNISCIEKEIAEFFVEGGSEEKMGLKFKDLSRAVEQCSGPGIAVNFGELEAFVGDGVPGAAVNFVVSQLTSLLEIHGGKLWLVGVAGTSDIYSKFLAMFPTAEKDWDLHLLTMTSATPAVEGLNSKSSLMGSFVPFGGFFSTPEFKIPVSCTNQSSTRCHACNEKYEQEVAEILKVGPATSASSYSTSFPWLQQVNVDTDKRLNVAKTNEEFTSLNATILGLQKKWADNCQHLHHHGSLPEFNISQTRSQVPPLGSLQFGLGFRESSSKDLSPDQIQYSNHCPYMPKELHRLQVSSDTVCLNTGTEQGAKVSKSQQTDMQNPWVAPSCVANMSQVDHRSSSSLISVTTDLGLGTLYTSAAQEPNTPKERDHRESLQRLSDSISTGFDAVNENTSRQIARSSSCSGPSFEGKLDSVDLKSLNQLLTERVGWQDEAIYAVNRTLSLCRSGTGKHRGSRARADIWLAFLGPDRVGKKKIASALAEIIFGNAERLISVDLSSHDRDYPLNTVFECQNSSCYDVLRRKTIVDYIAGELSKQPHSVVFLETVDKADFLVQNSLLQAIRTGKFPNSHGRETSVNNAIFIVTSTVFKGDGSFVLEKEHMFSEERILGAKRCQMQLLCGHFSDDAIRSSGTNVRITLRKETSKPTVLNKRKLIDGSDSIEQATTCKVQKQVLEASRSYLDLNMPLQEVEEDWLDDFYDQIDGKVPFKPFNFDALAEKLSKTISVQFQRTFGLGVMLEIDYEVMVHILAAAWLSDKKNAVENWIENVLGRSFNEALQKYRPEAPHLIKLVTCESIFVEEQAPGACLPANINLN 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g1850 1081 Gene3D - 665 977 IPR027417 -
Dere04g1850 1081 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1045 - -
Dere04g1850 1081 SUPERFAMILY Double Clp-N motif 12 118 IPR036628 -
Dere04g1850 1081 Pfam AAA domain (Cdc48 subfamily) 731 855 IPR003959 GO:0005524|GO:0016887
Dere04g1850 1081 CDD RecA-like_ClpB_Hsp104-like 684 857 - -
Dere04g1850 1081 ProSiteProfiles Clp repeat (R) domain profile. 8 176 IPR004176 -
Dere04g1850 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 681 1018 IPR027417 -
Dere04g1850 1081 Gene3D - 10 171 IPR036628 -
Dere04g1850 1081 MobiDBLite consensus disorder prediction 625 645 - -
Dere04g1850 1081 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 843 857 IPR001270 GO:0005524
Dere04g1850 1081 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 810 828 IPR001270 GO:0005524
Dere04g1850 1081 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 731 749 IPR001270 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g1850 Dere-ChrDere04 21189201 21194072 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1850 04 21189201 21194072 Dere05g0132 05 1741681 1746223 CCT
Dere04g1850 04 21189201 21194072 Dere04g1850 04 21189201 21194072 ECH
Dere04g1850 04 21189201 21194072 Dere05g0893 05 14592928 14597851 ECH
Dere04g1850 04 21189201 21194072 Dere05g0132 05 1741681 1746223 ECH
Dere05g0893 05 14592928 14597851 Dere04g1850 04 21189201 21194072 ECH
Dere02g1239 02 11871559 11874755 Dere04g1850 04 21189201 21194072 ECH