Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere02g1239 ATGAGAACAGGTAGCTGCGCTGTCCAACAGGGTCTAACTGCAGAGGCAGCCACCGTAGTCAAGCAGGCGGTGACGCTGGCGAAGCGTCGCGGTCACGCACAGGTGACACCCCTCCACGTGGCCAACACTATGCTGGCCTCCGCCAACGGCCTTCTCCGTACGGCTTGCCTCCAGTCCCACTCCCATCCTCTGCAGTGCAAGGCTTTGGAGCTTTGCTTCAATGTGGCCCTGAACCGCCTTCCTGCATCCAACAGTAGCGCCATGTTGGGACCCACTACCACTCACTATTCTCATTGCCCTTCCATCTCCAACGCCTTGGTCGCCGCCTTCAAGAGGGCACAGGCACACCAACGCCGTGGATCCATCGAGAATCAGCAGCAGCCCCTCCTGGCCGTCAAGATTGAGTTGGAGCAACTCATTATTTCCATCTTGGATGATCCTAGTGTTAGCAGAGTCATGAGAGAAGCCGGCTTCTCCAGTACTCAGGTCAAAAGTAATATAGAGCAGGCTGTGTCTTTGGAAATATGTTCTCAAAAGGAGAAAAATGACGTCGCCAAAGCATTGGTGTCATCGGATCCGGTTAGGTCCGAGGATGTGTCGAGTGTGATTGATAGTTTCATGAATCAGAGAAGGAGAAGTACCGTGGTCGTGGGTGAGTGTGTGGTTAGTCTTGAAGGTGTAGTGCGAGGAGTGATGGATAAGGTTGAAAAGGGAGACGTCGACGAGAGTATGAGAGGGGTTAAGTTTATTTCTCTTTCTCGTTCTGCTTTTGGGCATGTCTCTAAGGTCGAGGTTGAGAACAAGATTGAAGAGCTTAAGAACCTTGCAAAGAATAATTGTCATGGCAAAGGGTTTATTTTGTATGTGGGAGATCTTAAGTGGGTGTTTGAGTATAGAGGTCGTTCAACTTCAAGCCAGCAAGGGAGAGGGTATTATTGTCCTGTGGAACACATGATTATGGAGGTGGGAAAGCTGGTTAGTGGGATCGGAGAGAATAATAGGCTTAGGGTGATGGGTATAGCCACTTTTCAGACTTACATGAGATGTAAAAATGACCATCCATCGCTAGAGACTCTTTGGGGGCTTCATCCTCTTACTATTCCTGCAGGAAGCTTGCGCTTGAGTCTCATCACTGATACTGACAGTGGTCTACAAAATCAGTCCTCCAACAAGAAAGCTGAGAATGGAACTAGCTGGTTATTACTGGAACCAGAAGAGAAGCAACCAGCCTGCTTGGCCGAGTCTTCATCCAAGTTTGAGCCAGAAGTTCGAAGCTTGTTGAGTAGTACCAGTAATATTACTGACTCTTCCACAACCCTTCCTGCATGGCTCCAACTGTACAAACAAGAGAATAGAGCATCCTCCAATGAACAGATTTGTGTCCCAGTGGGAGACTTTTGTAAAAAGTGGAATTCTATGTGCAACAGTCAAATGCAAAAACAACCCTATCCTCAAGAAAAAACCCTCACGTTCTCTTCTGTATCACCTTCTTCATCTACTTCAGGCTTCTCATATAACCCGCTAAGGGACCACCCTTTCTGGATCTCTGAAAGTGGTAATAATAATGATAAGCCAAATGAACCCACTTTGAGAATGTACATCCCAGAGCATAAAAACGCTAAAAAACCAATCCCACCATCAAATCCTAGTTCAAACCCTAATTCCACTTCCTCTAGTGACCTCATGGAGACGGAGTATGTCAGCAAGTTCAAAGAGCTCAATTCAGAGAATTTGAAAACTCTATGCAATGCCTTGGAGAAAAATGTGCCGTGGCAGAAAGATATAGTACCAGACATCGTAAGCACGGTTTTACAGTGCCGGTCCGGCACGTTAAGAAGAAAGGAGAAGATCAGAAACAGCGAGGCGAAGGAAGAAACCTGGTTGTTCTTCCAAGGAGTTGATGTGGAAGCTAAAGAGAAAATAGCCAGAGAACTGGCTAGGCTAGTATTTGGGTCCCAGAGCAACAACCTCGTTTCGATAGCTTTAAGCAGTTTTTCATCAACAAGAGCAGATTCAACCGAGGAATATTGCAGAAACAAAAGATCAAGAGACGAACAAAGTTATAGTTACATTGAGAGACTCGGGGATGCAGTTTCTAGCAATCCTCACAGGGTGTTCCTGTTGGAAGACATAGAGCAAGCGGATTATTGTTCCCAACTGGGTTTAAAAAGGGCTATTGAAAGAGGAAGGATTGTTGATTCAAATGGTAAAGAGTTTAGTCTTTGTGATGCAATAATCATTCTGAGCTGTGAAAGTTTCAGCTCGAGGTCAAGAGCGTGCTCTCCTCCGGTTAAGCAGAAATCATCATCTGAAGGATCTGAAGAAGACAAGGATGATAAGATTGCTACTATGGAGGAGACAAGCCCTTGTGTGTCATTTGATTTGAATATTTCCATTGATGATGATTGTGATGAGGATCGGTCAGTGGATGACATTGGGCTTCTTGAGTCTGTAGACAGACGGATCATTTTCAAAGTTCTGGAATTATGA 2490 0.4582 MRTGSCAVQQGLTAEAATVVKQAVTLAKRRGHAQVTPLHVANTMLASANGLLRTACLQSHSHPLQCKALELCFNVALNRLPASNSSAMLGPTTTHYSHCPSISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDPSVSRVMREAGFSSTQVKSNIEQAVSLEICSQKEKNDVAKALVSSDPVRSEDVSSVIDSFMNQRRRSTVVVGECVVSLEGVVRGVMDKVEKGDVDESMRGVKFISLSRSAFGHVSKVEVENKIEELKNLAKNNCHGKGFILYVGDLKWVFEYRGRSTSSQQGRGYYCPVEHMIMEVGKLVSGIGENNRLRVMGIATFQTYMRCKNDHPSLETLWGLHPLTIPAGSLRLSLITDTDSGLQNQSSNKKAENGTSWLLLEPEEKQPACLAESSSKFEPEVRSLLSSTSNITDSSTTLPAWLQLYKQENRASSNEQICVPVGDFCKKWNSMCNSQMQKQPYPQEKTLTFSSVSPSSSTSGFSYNPLRDHPFWISESGNNNDKPNEPTLRMYIPEHKNAKKPIPPSNPSSNPNSTSSSDLMETEYVSKFKELNSENLKTLCNALEKNVPWQKDIVPDIVSTVLQCRSGTLRRKEKIRNSEAKEETWLFFQGVDVEAKEKIARELARLVFGSQSNNLVSIALSSFSSTRADSTEEYCRNKRSRDEQSYSYIERLGDAVSSNPHRVFLLEDIEQADYCSQLGLKRAIERGRIVDSNGKEFSLCDAIIILSCESFSSRSRACSPPVKQKSSSEGSEEDKDDKIATMEETSPCVSFDLNISIDDDCDEDRSVDDIGLLESVDRRIIFKVLEL 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere02g1239 829 ProSiteProfiles Clp repeat (R) domain profile. 8 174 IPR004176 -
Dere02g1239 829 MobiDBLite consensus disorder prediction 539 561 - -
Dere02g1239 829 MobiDBLite consensus disorder prediction 756 783 - -
Dere02g1239 829 MobiDBLite consensus disorder prediction 769 783 - -
Dere02g1239 829 Pfam Clp amino terminal domain, pathogenicity island component 134 171 IPR004176 -
Dere02g1239 829 Pfam Clp amino terminal domain, pathogenicity island component 23 47 IPR004176 -
Dere02g1239 829 SUPERFAMILY Double Clp-N motif 12 168 IPR036628 -
Dere02g1239 829 Gene3D - 181 361 IPR027417 -
Dere02g1239 829 Gene3D - 557 791 IPR027417 -
Dere02g1239 829 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 825 - -
Dere02g1239 829 Gene3D - 9 172 IPR036628 -
Dere02g1239 829 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 568 752 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere02g1239 Dere-ChrDere02 11871559 11874755 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere02g1239 02 11871559 11874755 Dere05g0893 05 14592928 14597851 ECH
Dere02g1239 02 11871559 11874755 Dere02g1239 02 11871559 11874755 ECH
Dere02g1239 02 11871559 11874755 Dere04g1850 04 21189201 21194072 ECH
Dere02g1239 02 11871559 11874755 Dere05g0132 05 1741681 1746223 ECH