Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0132 ATGCCGACGCGGGTCAACGCAGCGAGGCAATGCTTGACGGAGGAGGCGGCGCGTGCTCTTGACGATGCGGTGGCGGTTGCTCGCCGTCGCAACCACGCGCAGACAACCTCGCTTCACGCCGTTTCTGCCTTGCTCGCCCTGCCTTCCTCCACGCTCCGGGAAGCTTGCACACGCGCGCGGAGCTGCTCCTACTCGCCGCGTCTCCAGTTCCGAGCTCTAGAACTTTCCGTCGGTGTCTCCCTCGACCGATTGCCTACTTCCAAGGCACTCGAGGAAGATCCTCCTGTATCGAATTCTCTCATGGCCGCCATCAAACGTTCCCAAGCTAACCAGAGGAGGCATCCGGAGAGCTTCCATTTGTTTCAGATGCATAGCCTCCAGCAGCAAACGACGTCGTTCTTGAAGGTCGAGCTCAAGCACTTCATCTTGTCGATTCTTGATGACCCGATTGTGAGTAGGGTTTTTGGAGAAGCGGGTTTCCGGAGCTGCGACATCAAGCTCTCGTTGCTTCAACCACCGGTGACACAAGCTTCTCGGTTCTCCCGGGGCCGTTGCCCGCCCATTTTCTTGTGTAATTTGACGGGTTCGGAATCGGGTCGGTCCGGTTTCAACTTCCCTTTCATGGGAAGTTCTGAAAATGAAGGCGTAGATGGGAATTGTAGAAGAATCGGGGAGGTTCTTGTGAGGAAGACGAAGAGAAACCCCTTGTTGATGGGCGTTTACGCGAAAAGTGCTCTTCGGAGTTTCAGAGAGTCAGTACAGAAAGGTCGAGAGGGAGTGTTGCCAGCTGGGATAGCTGGGTTGAATATAATCAGCATTGAGAAGGAGATTTCTGAGGTTCTTTCTGAAGGTGGGAGTGAGGAGAAGATGGGTTTGAAATTTGAGGAGTTGAACCGTTCATTGGAGCAATGCTCTGGTCCAGGTATCGCCGTGAACTTAGGAGAGCTTGAGGTGTTTGTCGGCGACGGCGTGCCTCGTGGTGCTGCCAGCTTTGTTGTTTCTCAATTAACAGGCTTATTAGTGGTTCATGGTGAAAAAAGTTGGGTGGTGGGTGTTGCTGGAACCTCAGATGTATATTCTAAGTTCTTAGCTCTGTTTCCAACTATAGAAAAGGATTGGGATCTGCATCTACTGACTATGACATCTGCCACCCCTTCAATGGAAGGACTCTACTCTAAATCCAGCTTGATGGGGTCCTTTGTTCCATTTGGTGGGTTCTTTTCATCACCTTCTGAATTAAAAAATCCTGTAAGCTCTACAAATCAAAGTTTTACTCGTTGTCACGCCTGCAATCAAAAGTATGAACAAGAAGTTGATGATATTCTAAAAGGAGGTCAAACTACTTTATCATCTGGTTGCTCTACAAGCTTGCCTTTGTCACAAAAGGCTAGTGTGGACATAGATCAAGAACTGGATGTGGCGAAGACTACAGAAGAAAAGGATAGTTTGAATGCCAAGATCTTGGGATTGCAAAAGAAATGGAATGACTTTTGTGAAAGACTTCTTCACACCCGGTCATTACCTGAATTTGATACATCCCAAACAAGATCTCAAGTTCCAATCCTTGGGGGCTTTCAAGTTAATTCAGGTTTAAAAGAAAGTAGCAGTAAATATCCATCTCTTCATAAATTCCATTATCCTCATGATATTGCTAGTCTTAGTACTGGATCTGACCAGGTAGCAAAAGTTTCAAAAAGTCAGCAAACTGATCAGCCAAGCCCTTGGATTAACCCTTCTTCTATGGAAAATACAAGTATGCTTGATAGCAGATCATCTTCATCCCTTACTTCGGTGACCACAGATTTGGGATTGGGAACGATATATATGTCAGCTGCTCAAGATCCAAGTACCGAAAAACTACAAAATCATAAAGAGCGTCTTAAGGGTTTGAATGACAATAATTTACCCCAAAGTGCTGGATCCGCTGCATGCTCTGGCCCCAGTTTAGAAGGGAAATTTAATTCAGTAGATTTCAAGTCTCTTAATCGGCTTCTCACAGAAAAGGTTGGTTGGCAAGACGAGGCCATATGTTCTATCATTCAAACCTTGTCCCTTTGTAGGTATGGCAGAGGAAATCATTGTGGCTCACACGTTAGAGCAGACATATGGTTTGCTTTCCTTGGACCTGATAGATTTGGAAAGAAGAAAATTGCTTCGGTGCTTGCTAATATAATATTTGGAAACACAGAAAACCTGATCTCTGTGGATTTGAATTCCCAGGACAGAGCTTACCCATTAGACTCGATATTTGAAAGCCCAAATTCAAATTGTTATGATATGCTTAGGAGGAAAACAGTTGTGGATTACATTGCTGGGGAGTTGAATAAGAAACCTCACTCAGTTGTCTTTCTTGAAAATGTAGATGAAGCTGATTTTCTGGTGCAGAATAGTTTATTTCAGGCAATAAGAACCGGTAGATTTCCAGACTTACATGGAAGGGAAATCAGCATTCATAATGTAATCTTCATTGTAAGCTCAACTGTCTCTATAGGTAATGGAACTATAGTTTCGGAGAAGCCTGCAATGTTTTCTGAGGAAAGAATCCTTGAAGCCAAAAGATTTCAAATGCAATTACTTCTTGAACATGTTTCTGAGGATGCCCAAAGAAGCTGTGACCCAAATGTTATTGTTGCACCAAGAAAAGGGTCCTCTAAATCGACATTTCTGAACAAAAGAAAGCTGGTTGAAATCGGTGACAACGAAGAGCTAGCAAAACAAAGCAAGATCCAGAAACAAGCATCAAGATCCTGTCTGGATCTAAATATGCCTCTAGAGGAGGTTGAAGAGGATATGGATCACAATGACGGTCAGAGTAAATCCATAGTTGAAAGCTCTGAAGCCTGGTTGAATGATTTCTACGATCAAATTGATGAAAAAGTGACTTTCAAGCCATTAAATTTCGACGCGCTTGCTGGGAGGATATTAAAAAGCATTAGCATCCAATTCCAAAGGACGTTTGGATCAGAATTTCGGTTGGTAATTGACTATGAAGTGATGATACAGATACTTGCAGCTACTTGGTTATCAGACAAGAAAAATGCAGTGGAGGATTGGGTTGAACATGTGCTTGGTAGAAGCTTCAATGAAGCCAAGCAGAAAAATTACCCTCCAGCTGAGTTTGTGATGAAACTGGTTTCTTGTGAAGGCATTTTTATGGAAGGGCAAGCTACTGGAGTATGCCTTCCAGCTAGAATTAGCTTGAACTAA 3207 0.4422 MPTRVNAARQCLTEEAARALDDAVAVARRRNHAQTTSLHAVSALLALPSSTLREACTRARSCSYSPRLQFRALELSVGVSLDRLPTSKALEEDPPVSNSLMAAIKRSQANQRRHPESFHLFQMHSLQQQTTSFLKVELKHFILSILDDPIVSRVFGEAGFRSCDIKLSLLQPPVTQASRFSRGRCPPIFLCNLTGSESGRSGFNFPFMGSSENEGVDGNCRRIGEVLVRKTKRNPLLMGVYAKSALRSFRESVQKGREGVLPAGIAGLNIISIEKEISEVLSEGGSEEKMGLKFEELNRSLEQCSGPGIAVNLGELEVFVGDGVPRGAASFVVSQLTGLLVVHGEKSWVVGVAGTSDVYSKFLALFPTIEKDWDLHLLTMTSATPSMEGLYSKSSLMGSFVPFGGFFSSPSELKNPVSSTNQSFTRCHACNQKYEQEVDDILKGGQTTLSSGCSTSLPLSQKASVDIDQELDVAKTTEEKDSLNAKILGLQKKWNDFCERLLHTRSLPEFDTSQTRSQVPILGGFQVNSGLKESSSKYPSLHKFHYPHDIASLSTGSDQVAKVSKSQQTDQPSPWINPSSMENTSMLDSRSSSSLTSVTTDLGLGTIYMSAAQDPSTEKLQNHKERLKGLNDNNLPQSAGSAACSGPSLEGKFNSVDFKSLNRLLTEKVGWQDEAICSIIQTLSLCRYGRGNHCGSHVRADIWFAFLGPDRFGKKKIASVLANIIFGNTENLISVDLNSQDRAYPLDSIFESPNSNCYDMLRRKTVVDYIAGELNKKPHSVVFLENVDEADFLVQNSLFQAIRTGRFPDLHGREISIHNVIFIVSSTVSIGNGTIVSEKPAMFSEERILEAKRFQMQLLLEHVSEDAQRSCDPNVIVAPRKGSSKSTFLNKRKLVEIGDNEELAKQSKIQKQASRSCLDLNMPLEEVEEDMDHNDGQSKSIVESSEAWLNDFYDQIDEKVTFKPLNFDALAGRILKSISIQFQRTFGSEFRLVIDYEVMIQILAATWLSDKKNAVEDWVEHVLGRSFNEAKQKNYPPAEFVMKLVSCEGIFMEGQATGVCLPARISLN 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0132 1068 Coils Coil 473 493 - -
Dere05g0132 1068 ProSiteProfiles Clp repeat (R) domain profile. 8 181 IPR004176 -
Dere05g0132 1068 MobiDBLite consensus disorder prediction 564 594 - -
Dere05g0132 1068 CDD RecA-like_ClpB_Hsp104-like 657 826 - -
Dere05g0132 1068 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1031 - -
Dere05g0132 1068 Gene3D - 10 171 IPR036628 -
Dere05g0132 1068 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 654 1005 IPR027417 -
Dere05g0132 1068 Gene3D - 648 878 IPR027417 -
Dere05g0132 1068 SUPERFAMILY Double Clp-N motif 12 117 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0132 Dere-ChrDere05 1741681 1746223 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1850 04 21189201 21194072 Dere05g0132 05 1741681 1746223 CCT
Dere05g0132 05 1741681 1746223 Dere05g0132 05 1741681 1746223 ECH
Dere05g0132 05 1741681 1746223 Dere05g0893 05 14592928 14597851 ECH
Dere04g1850 04 21189201 21194072 Dere05g0132 05 1741681 1746223 ECH
Dere05g0893 05 14592928 14597851 Dere05g0132 05 1741681 1746223 ECH
Dere02g1239 02 11871559 11874755 Dere05g0132 05 1741681 1746223 ECH