Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02517 ATGCACCAAAGGGACAGACAGAAACCCACCCCACACAGGAGAAGAACCCCTTCCTTCTCCTCCTCCCTTCTCGACGCCATTTACCACTCCACCGACGACACAAAATCCGATCTTCACCAGGATCACCATCTGGGTCAAACCACCCACACTTTCAGCCACAACGCTCAGACACGTGGCAAAGAGAGAATGAATCTTCGCCGTGCCGTCATGCTCGAAGATTGGATGGAGAAGCGCACTTCCCATTCTCATTCCCTTGGTTCTCACTTGCTGAACTCGAGTTCAAGCTCCTCCGAATGCAGCTCCGGGGGAATATTCTCCTCTTCAGAAACTGACACGACAACAACCTCAAAGAAACAAAAACCAAGACCCACCTCGGAGAAGCAGAAGAAGAAGGAGGGTGGTTTTGCAAGGGCCTTGAAAATCTACGGCGAGTTCAATCAGAGAGTGAAGCAACCCGTTTCACCCGGGAGTAGAATAGCCACGTTCCTTAGCTCCATCTTCAACTCTCAGAACGTGAAGAAAGCCAAAATGTGTTACGTGGGTGCTGTCGAAGACGTTACTTTCGACCACAAAACCAAGTCCCCGTCTTTCTCTTCCACGCCTTCTTCCTTCTCCAGAAGGTCTTGCATGAGCAAAACACCTTCTTCCGCCAAAAAATCCAACGATGGGGTTAAAAGATTCGTCAGGTTTTACCCCGTTAGCGTAATCCTAGGTGAGGATCCTCATCCACAATCCAGCAACAACGTTTATGAGACTCAACCTAGTCTTAGTGTCAGAAAGATTACGAGAAATTCTTCGATCAAGGAGCTCAACAACACCAAAGAAAATAGAATTGAAGAAGCAGCGGCGCGTGGTTTTATTAAAGGATACCGAAATTCTGATAATACGGGTACTGAATTTGATTTTAGAGGTTTTTatgataatgttgagaatgagaacgaggatgatgaagaagaggatgatgatgtgaGTTGTTCAAGTTCGGATTTGTTTGAGCTGGATCATCTCATTGGAGCTGCAAGGTACCAAGAAGAGCTTCCAGTTTATGAAACTACCAATTTGGAAACAAATAAAGCCATTGCTAGTGGTCTATGTTTGTAG 1101 0.4414 MHQRDRQKPTPHRRRTPSFSSSLLDAIYHSTDDTKSDLHQDHHLGQTTHTFSHNAQTRGKERMNLRRAVMLEDWMEKRTSHSHSLGSHLLNSSSSSSECSSGGIFSSSETDTTTTSKKQKPRPTSEKQKKKEGGFARALKIYGEFNQRVKQPVSPGSRIATFLSSIFNSQNVKKAKMCYVGAVEDVTFDHKTKSPSFSSTPSSFSRRSCMSKTPSSAKKSNDGVKRFVRFYPVSVILGEDPHPQSSNNVYETQPSLSVRKITRNSSIKELNNTKENRIEEAAARGFIKGYRNSDNTGTEFDFRGFYDNVENENEDDEEEDDDVSCSSSDLFELDHLIGAARYQEELPVYETTNLETNKAIASGLCL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02517 366 Coils Coil 264 284 - -
Cca11g02517 366 MobiDBLite consensus disorder prediction 84 133 - -
Cca11g02517 366 MobiDBLite consensus disorder prediction 1 21 - -
Cca11g02517 366 PANTHER PROTEIN BIG GRAIN 1-LIKE A-RELATED 4 366 IPR039621 GO:0009734
Cca11g02517 366 MobiDBLite consensus disorder prediction 191 220 - -
Cca11g02517 366 PANTHER PROTEIN BIG GRAIN 1-LIKE A 4 366 - -
Cca11g02517 366 MobiDBLite consensus disorder prediction 84 119 - -
Cca11g02517 366 MobiDBLite consensus disorder prediction 192 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02517 Cca-Chr11 52312421 52313659 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02517 - - gmx:100803228 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02517 11 52312421 52313659 Cca11g00382 11 5059629 5061131 ECH
Cca11g02517 11 52312421 52313659 Cca03g01697 03 36070764 36072103 ECH
Cca11g02517 11 52312421 52313659 Cca05g00792 05 21883290 21884860 ECH
Cca11g02517 11 52312421 52313659 Cca11g02517 11 52312421 52313659 ECH