Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01697 ATGTACGCCCTCCACACCTCCCAAAACCACGCTAAAAATCCCTCCTTTTCCTCCTCCCTTCTCGACAAAATCTACCAAGACACCGACATCAACTTCTACGCCCAAACCATGCTCACCAACCAAGACTTATCAGCGCCAACCATTCGCCGCGCTTGTTCGCTCCACAAATGGAAACCCACCCAAAAAACACTCAGAAAATCGCCTTGGAATCATCCCGACCACCACCACGAGGCTCTCTTCTTCAGTTCAACTTCGACTTCCTCGGATTCCAGTTCCGGATTATTATCCTCATCCGACACGGAATCATTGTACGGTGGGAGGGCGCGTGTTTCGTGTTTCGCCCCGTCCAGGCCCAACCCCGTGATGACGTCAGCCAATGAAGAGGGTTTGATCAAGTCAAAATCCAGGGCCTTGAAGATTTACAACAATCTCAAGAAAGTGAAGCAGCCCATATCACCCGGAGGGAGGCTCAGTAGTTTCCTCAACTCCCTGTTCGCGACACGAACCGCCAAGAAAACCAAAACCTACGACCGCGCCGAGCCCGCAAAGTCCGGACAAGACTCCACGTGTTCCTCCGCCTCCTCCTTCTCGCGCTCTTGTTTGAGCAAGTCTTCGTCGAACAAGCTCCGCGACGGGGTTAAGCGAACGGTGCGTTTTTACCCCGTCAGCGTCATCGTCGACGAGGATTGTCGTCCGTGCGGCCATAAGTGTTTGTACGAAGAGGACACGCGTGTAATGCCTGTGTCTGTGCCAACCGCATGGAAAATTTCACGAAACAAAAGCCAAGAAGAAGAAGAAAATGCTGTGGATAAGAGCAGGCGCGTGGAGGAGACTGCTAGAGAGTTCTTGAAAGAGTACCATCGAACCCAGAAGAAGAGCGATTTGGTTTTAAGGGATTTTCCtcgtcatgatgatgacgacgatgatgcagccagttattcaagttcggatctgtttgagcttgatcacctatcggtgatgggaaataataGGTATCGTGAGGAGCTTCCCGTCTACGAGACTACTCATCTTAGTACGAATCGCGCCATTGCCAATGGCCTCATATAA 1068 0.4738 MYALHTSQNHAKNPSFSSSLLDKIYQDTDINFYAQTMLTNQDLSAPTIRRACSLHKWKPTQKTLRKSPWNHPDHHHEALFFSSTSTSSDSSSGLLSSSDTESLYGGRARVSCFAPSRPNPVMTSANEEGLIKSKSRALKIYNNLKKVKQPISPGGRLSSFLNSLFATRTAKKTKTYDRAEPAKSGQDSTCSSASSFSRSCLSKSSSNKLRDGVKRTVRFYPVSVIVDEDCRPCGHKCLYEEDTRVMPVSVPTAWKISRNKSQEEEENAVDKSRRVEETAREFLKEYHRTQKKSDLVLRDFPRHDDDDDDAASYSSSDLFELDHLSVMGNNRYREELPVYETTHLSTNRAIANGLI 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01697 355 Coils Coil 261 281 - -
Cca03g01697 355 MobiDBLite consensus disorder prediction 173 206 - -
Cca03g01697 355 MobiDBLite consensus disorder prediction 182 206 - -
Cca03g01697 355 PANTHER PROTEIN BIG GRAIN 1-LIKE B 7 355 - -
Cca03g01697 355 PANTHER PROTEIN BIG GRAIN 1-LIKE A-RELATED 7 355 IPR039621 GO:0009734
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01697 Cca-Chr3 36070764 36072103 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01697 - - ccaj:109816120 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01697 03 36070764 36072103 Cca03g01697 03 36070764 36072103 ECH
Cca03g01697 03 36070764 36072103 Cca05g00792 05 21883290 21884860 ECH
Cca11g02517 11 52312421 52313659 Cca03g01697 03 36070764 36072103 ECH
Cca11g00382 11 5059629 5061131 Cca03g01697 03 36070764 36072103 ECH