Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00792 ATGCACAATTCACAAAACAAACAAAGGGACCACCACAACATGTTACTTACCCCTTCCTTCTCTTCCACCCTCCTCGACCAAATTTACCGTTCCATCGACACAAAAACCGCCGAAACTAACTTCTACACACACACAACAATCAGACACACCAGAGCCAACTCCAAATCCACTCCAACCGACACTAAATCTTTCACCGCAAAATCCGACAGGAAATCGCGCCCTGCTGACGTGGACATCCTCGACCAAGACGCTCTCTTCTTCAGCTCCACCTCCATCTCCTCGGATTCCAGCTTCGGATTCTCCTCCGACACCGAGTCCCTCTCACGCGCCTCGTGTTTCGCCcccaggcccaggcccaggcccaggcccaagcccaggcccGTCTCCGCCTCCGCCTCCACATCCTTCAGGTCCGACAAACACGGAATGCGCGTGTTCGACGCTTTCTGTCGGAACTCCCACACTTCCGaagaacaacaacaacaacaacagcgacacaacGAGGAAGCGCTCATGATAAAGTCAAAATCCAGAGCGTTGAAGATTTACAACAACCTCAAGAAAGTGAAACAACCCATTTCTCCAGGTGGCAGAGTCACGAGCTTCCTCAACTCGCTCTTCGCCAACGCCAAAAAAACCACCCCCCGCACGTGCCGCGCCGAAGTCGGCGcttcttcttcttcttctgcctccgcctcttcttACTATTCCGGCACGTGTGATTCCTCGTCGCGGTCTTGCCTGAGCAAGACCCTAACTTCCGAAAGGGAGGCGCTGCGCGACGGCGTGAAGCGAACGGTGCGTTTTTACCCCGTGAGTGTGATCGTGGGCGAGGATAGTCGACCCTGTGGGCACAAACGCTTGGGGGAAGAAAAACAACCTTCTACAGACTTCTTACGCTACACCCACAAGAAGAGGAATAATGATTTGGTTTTCAAGGACTTGTCTTTCAGTGTCCatgatgatgatgttgatgacgacgacgacgacgacgatgacgatgacgatgatgCTTCGAGTTACGCCAGTTCGGATCTCTTCGAGCTCGATCATTTGGCTGTGTTTGGAAGTGCAAGGTATTGCGAGGAGCTTCCGGTGTACGAAACGACTCATGTTAGTACTAACAACGCCATTGCTAATGCCCTCATAGTGTAA 1155 0.4502 MHNSQNKQRDHHNMLLTPSFSSTLLDQIYRSIDTKTAETNFYTHTTIRHTRANSKSTPTDTKSFTAKSDRKSRPADVDILDQDALFFSSTSISSDSSFGFSSDTESLSRASCFAPRPRPRPRPKPRPVSASASTSFRSDKHGMRVFDAFCRNSHTSEEQQQQQQRHNEEALMIKSKSRALKIYNNLKKVKQPISPGGRVTSFLNSLFANAKKTTPRTCRAEVGASSSSSASASSYYSGTCDSSSRSCLSKTLTSEREALRDGVKRTVRFYPVSVIVGEDSRPCGHKRLGEEKQPSTDFLRYTHKKRNNDLVFKDLSFSVHDDDVDDDDDDDDDDDDDASSYASSDLFELDHLAVFGSARYCEELPVYETTHVSTNNAIANALIV 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00792 384 MobiDBLite consensus disorder prediction 109 137 - -
Cca05g00792 384 MobiDBLite consensus disorder prediction 49 75 - -
Cca05g00792 384 PANTHER PROTEIN BIG GRAIN 1-LIKE A-RELATED 1 60 IPR039621 GO:0009734
Cca05g00792 384 PANTHER PROTEIN BIG GRAIN 1-LIKE A-RELATED 70 384 IPR039621 GO:0009734
Cca05g00792 384 MobiDBLite consensus disorder prediction 49 63 - -
Cca05g00792 384 MobiDBLite consensus disorder prediction 221 246 - -
Cca05g00792 384 PANTHER PROTEIN BIG GRAIN 1-LIKE B 70 384 - -
Cca05g00792 384 PANTHER PROTEIN BIG GRAIN 1-LIKE B 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00792 Cca-Chr5 21883290 21884860 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00792 - - ccaj:109817936 640.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00792 05 21883290 21884860 Cca05g00792 05 21883290 21884860 ECH
Cca03g01697 03 36070764 36072103 Cca05g00792 05 21883290 21884860 ECH
Cca11g02517 11 52312421 52313659 Cca05g00792 05 21883290 21884860 ECH
Cca11g00382 11 5059629 5061131 Cca05g00792 05 21883290 21884860 ECH