Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00382 ATGGACAAGTGGGACAACAAACCCTCAAGGAAACAGCACCACAGAGAAAACCCTTCTTTCTCTTCCACTCTCTTAGACGTTATCTACCGTTCCATCGACGAAGATCCAAAGTTGGAGAAGGAGGAAGAGCAACTCATCTTCTACAGAGAAACCATGAGGAAGCAGAAACAGAGCAACTCTGAAGCAGAGAAACACAACTCTCGCAGGGCCAGGAAGGTGGAGAGTTGGATGGAGAAGAGAACCAGCGAGAAAGTCTTAATGGGAAGGAACTCTTTGACGGAATTTGAGAGAAGAACGCGAAGTAATTCAATTTCGAACACACTCTCCATGCATTCGAGCTCAACCTCCTCTGAGTCAAGCTCTGCTGGGGGGTTCTCTTCTTCAGAGTCAGAGTCCTTCTATGGAGTGCAAAGGCCAAAGCCAATTAAAACCAGCGTCTATGACAAAACCAAAACCAAAACCAACTTTGATGCTGCACTTCACAACCACAACCACAACCACAGCTACAGGAGCCACTCTTCCCAAACCCAAAAGCCAAAACATGAGAATGGTTTTGGGAAGACAAAGTCCAAGGCCTTGAAAATCCTATATGGTGAGTTGAAGAAAGCAAAGCAACCAATTTCACCAGGCGCAAGGCTTGCTAGCTTTCTCAACTCTCTCTTCACTTCAAGTGGAAGTGCCAAAAAAGCAAAGGTCTCAACAACAACATCAACTTGTCATCCCGTCCTGATCCCGATTGCAACAGATCGTGCCGCTGCTGATGCTAAATTAGCATCAGCAACAGCACAACCTTCTTCTACATGTTCATCAGCATCTTCTTTTTCAAGGTCTTGTTTAAGCAAAACACCTTCTTCAAGATCAGGTGCAAAGAGATCAGTGAGGTTTTGCCCTGTGAGTGTGATAGTGGATGAAGATTGTAGGCCTTGTGGACACAAGAATCTTCATGAGGGTGAAGACAATTTGATGGCTTCCAATGGAAGGAACAGAAGTGAGGAGCTTAGGTTGCATGTCATGCAGGAGAGTCGCAAGGTGGAGGAGTTGGCAAGAGATTTGTTGAAGGAGTATCAGAAAaagaatgaagtggagtttgatgatgtcatgcattatgaagatgaagaagaagatgatgatgatgTGGCAAGTTGTTCAAGTTCTGATCTCTTTGAGTTGGATAATCTATCAGCAATTGGGATTGAGAGTGTTCTTCATGGTGTTGTGTTTGGTTTGGTTGTGTGGTTAAAGAGTTTACCTCATGCAATATCATTGAGCAAGAGAGGGTAA 1281 0.4247 MDKWDNKPSRKQHHRENPSFSSTLLDVIYRSIDEDPKLEKEEEQLIFYRETMRKQKQSNSEAEKHNSRRARKVESWMEKRTSEKVLMGRNSLTEFERRTRSNSISNTLSMHSSSTSSESSSAGGFSSSESESFYGVQRPKPIKTSVYDKTKTKTNFDAALHNHNHNHSYRSHSSQTQKPKHENGFGKTKSKALKILYGELKKAKQPISPGARLASFLNSLFTSSGSAKKAKVSTTTSTCHPVLIPIATDRAAADAKLASATAQPSSTCSSASSFSRSCLSKTPSSRSGAKRSVRFCPVSVIVDEDCRPCGHKNLHEGEDNLMASNGRNRSEELRLHVMQESRKVEELARDLLKEYQKKNEVEFDDVMHYEDEEEDDDDVASCSSSDLFELDNLSAIGIESVLHGVVFGLVVWLKSLPHAISLSKRG 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00382 426 MobiDBLite consensus disorder prediction 1 24 - -
Cca11g00382 426 MobiDBLite consensus disorder prediction 163 186 - -
Cca11g00382 426 PANTHER PROTEIN BIG GRAIN 1-LIKE A-RELATED 10 399 IPR039621 GO:0009734
Cca11g00382 426 MobiDBLite consensus disorder prediction 50 137 - -
Cca11g00382 426 Coils Coil 38 58 - -
Cca11g00382 426 MobiDBLite consensus disorder prediction 1 17 - -
Cca11g00382 426 MobiDBLite consensus disorder prediction 97 134 - -
Cca11g00382 426 MobiDBLite consensus disorder prediction 262 289 - -
Cca11g00382 426 MobiDBLite consensus disorder prediction 50 96 - -
Cca11g00382 426 PANTHER PROTEIN BIG GRAIN 1-LIKE A 10 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00382 Cca-Chr11 5059629 5061131 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00382 - - gmx:100798956 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02517 11 52312421 52313659 Cca11g00382 11 5059629 5061131 ECH
Cca11g00382 11 5059629 5061131 Cca11g00382 11 5059629 5061131 ECH
Cca11g00382 11 5059629 5061131 Cca03g01697 03 36070764 36072103 ECH
Cca11g00382 11 5059629 5061131 Cca05g00792 05 21883290 21884860 ECH