Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00962 ATGAGGGAGGTTGTGATTATTGCAGTTGCTGCTACACTGGGGAATCTGCTGGTTGGATGGGATAGTTCAACCATTGCAGGGGGCATGAGTTACATCAAACAAGAGTTCAAATTGGACAGCGACCCTACACTGGAGGGGCTAATCGTGTCGACACCATTCATCACGGGCACAGTTGTTACAATATTCTCAGGGACAGTTTCGGACATTCTTGGAAGGCGTCCAATGCTGATAGCATCATCGGTCATGTTTTTCTTGAGCGGTTTGGTGATGCTTTGGGCCCCTAATGTGAGTGCGGTTCTGTGTTCAAGGCTATTGGATGGAGTTGCCATTGCACTTGCCATAACACTCACTCCTCTCTACATATCAGAGATTGCACCACCTGACATCAGAGGCACTCTCAACACTCTCCCACAGTTTTCATGCTCCGCGGGGATGTTTGTGGCCTACGTCATGGTCTTCTGCATGTCCTTGACGGACGCACCAAGTTGGAGAGCAATGCTTGGTGTTGTGTCTGTTCCTTCTGTTGCTTATTTCTCTCTGGCCATGTTTTATCTCCCTGAGTCTCCTCCTTGGCTTGTCAGTAAAGGGAGAATCCCTCAGGCTAGGAAAGTTTTGCAAAGGATTCGAGGCACTGAAGATGTTTCAGGGGAACTGGCTCTACTGTCTGAGGGAATGAGTCCTGGGGGTGAAGGCACCACAATAGAAGAGTACATGGTAGCCCCTGCAAGTGACCTCATGGCAACAAAGGAAGCAGGTAGGGATTGCATAAAGCTCTATGGACCCAACCAAGGAGGGGTTTCAATGGTTGCACAACCACTGAGTGGACAAGGTAGCATGTTATCACGAAGCATGTTAACCTTGTCTCGCCAGGGAAGCCTCGTTGCTCAGGCTCAAAACCTCAAAGACCCTTTAGTCAGCCTCTTTGGAAGCCTGCACGAGAGTGTTAACCCCCTAGAGCTTGGTGCCTCAAGAAGCACGCTGATGATTGAGCCTGATCAGAGCCCCTTTGGGACCAGTGACAACCTGCATGCACCACTGCTTTCGGCCCAAGTAAGCATTGATAAGGCTTTGGGGGAGATACCTAAGAACACTGACATTGGTGGGGGGTGGAAACTGGTTTATAAGACTTCTGAGGGTGGGAAAAATGATGGGAAACTACAAAGGGTTTATCTGCGTGCGGATACTAATGCGGCGTCTCAGCATGGTTCGTTTGTTACTGGTTCTGGCTATGACTTGCATGTAGAtggtgttggtgctggtggtgctggtggtgAGTCTTTTCAGGCGGCTGCACTTGTCAGCCACTCGGTTCTCATCCCTAAGGATGTCAACATTAAACAAGAAGTTGCTTCTGCCAAACGCAAAGGTTTAGGAGATTTGTTTGATACAGGAGTCAAGCGGGCATTGACTGTTGGAATTGGACTGCAACTTCTTCAGCAGTTTGCTGGCATAAATGGATTTCTATACTATGCTCCCCAGATTCTTGAACAAGCAGGTGTTGGGGATCTTCTGTCACATTTGGGCTTTACTCCAACATCTGCTTCGTTACTCGTAAATGTCGTTACAACATTCACTATGCTTCCTTGTATAGCCATTTCCATGAGGCTCATGGATGTTGCAGGCAGGAGGTCAATATTGCTATACACAATACCAATCTTGATAGTGTCTCTGATGATACTAGTAGTACGGAACTCAATCCCCATGAGTTCTACCCTGAATGCAATAATCACTGCAGCAAGTGTTATGGTGTACGAAAGCTGCTTCTGCATGGGACTTGGTGTGATTCCCAACATCTTGTGTTCAGAAATCTTCCCAACAAGTGTTCGTGGAATATGCATTTCTATTTGCTCCCTTACATTTTGGATCTGCATCTTGATAGTCACTTCTACATTTCCCTTCTTGATCCAGCTCCTTGGTCTCACTGGGGTCTTTGGATTGTACGTTGTTGGGTGCATCCTTGCATGGATATTTGTCTACTTGAAAGTTCCTGAAACTAAGGGCATGCCTTTAGAAGTCATCATTGAGTTCTTCTCTATTGGTTCAAAGCCTGAATGA 2055 0.4628 MREVVIIAVAATLGNLLVGWDSSTIAGGMSYIKQEFKLDSDPTLEGLIVSTPFITGTVVTIFSGTVSDILGRRPMLIASSVMFFLSGLVMLWAPNVSAVLCSRLLDGVAIALAITLTPLYISEIAPPDIRGTLNTLPQFSCSAGMFVAYVMVFCMSLTDAPSWRAMLGVVSVPSVAYFSLAMFYLPESPPWLVSKGRIPQARKVLQRIRGTEDVSGELALLSEGMSPGGEGTTIEEYMVAPASDLMATKEAGRDCIKLYGPNQGGVSMVAQPLSGQGSMLSRSMLTLSRQGSLVAQAQNLKDPLVSLFGSLHESVNPLELGASRSTLMIEPDQSPFGTSDNLHAPLLSAQVSIDKALGEIPKNTDIGGGWKLVYKTSEGGKNDGKLQRVYLRADTNAASQHGSFVTGSGYDLHVDGVGAGGAGGESFQAAALVSHSVLIPKDVNIKQEVASAKRKGLGDLFDTGVKRALTVGIGLQLLQQFAGINGFLYYAPQILEQAGVGDLLSHLGFTPTSASLLVNVVTTFTMLPCIAISMRLMDVAGRRSILLYTIPILIVSLMILVVRNSIPMSSTLNAIITAASVMVYESCFCMGLGVIPNILCSEIFPTSVRGICISICSLTFWICILIVTSTFPFLIQLLGLTGVFGLYVVGCILAWIFVYLKVPETKGMPLEVIIEFFSIGSKPE 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00962 684 Gene3D MFS general substrate transporter like domains 2 276 IPR036259 -
Cca11g00962 684 ProSiteProfiles Major facilitator superfamily (MFS) profile. 7 666 IPR020846 GO:0022857
Cca11g00962 684 Gene3D MFS general substrate transporter like domains 433 679 IPR036259 -
Cca11g00962 684 ProSitePatterns Sugar transport proteins signature 1. 63 80 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cca11g00962 684 PANTHER TONOPLAST MONOSACCHARIDE TRANSPORTER 2 360 677 - -
Cca11g00962 684 PANTHER TONOPLAST MONOSACCHARIDE TRANSPORTER 2 1 240 - -
Cca11g00962 684 Pfam Sugar (and other) transporter 8 219 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cca11g00962 684 Pfam Sugar (and other) transporter 442 674 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cca11g00962 684 PANTHER - 1 240 - -
Cca11g00962 684 PANTHER - 360 677 - -
Cca11g00962 684 ProSitePatterns Sugar transport proteins signature 1. 533 549 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cca11g00962 684 PRINTS Sugar transporter signature 15 25 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca11g00962 684 PRINTS Sugar transporter signature 100 119 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca11g00962 684 PRINTS Sugar transporter signature 479 489 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca11g00962 684 PRINTS Sugar transporter signature 578 599 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca11g00962 684 PRINTS Sugar transporter signature 601 613 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca11g00962 684 SUPERFAMILY MFS general substrate transporter 9 671 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00962 Cca-Chr11 20498873 20504562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00962 53 684 Organic Solute Cotransporters AT3G51490 49.639 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00962 - - gmx:100792264 1064.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00962 11 20498873 20504562 Cca11g00962 11 20498873 20504562 ECH
Cca06g01160 06 25991499 25995476 Cca11g00962 11 20498873 20504562 ECH
Cca04g00371 04 3738631 3740651 Cca11g00962 11 20498873 20504562 ECH
Cca07g00007 07 155483 161716 Cca11g00962 11 20498873 20504562 ECH