Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01160 ATGATGGAGGTTGTGATTGTTGCGGTTGCTGCAACACTTGGGAATCTTCTGATGGGTTGGGATAGTTCAACCATTGCAGCGGGTATGACCTACATCAAGGAGGAATTCGACTTGGATGCGACACTTGAAGGGCTAATAGTGTCCATGTCGTTTATAACCGGTACTGTTGTGACAATATTCTCTGGAACAGTGTGTGATTTGGTTGGAAGACGCCCTATGCTGATAACATCTTCTGTCATGTTTTTCCTTAGCGGTCTGATAATGTTGTGGACTCCTAATGTTATTGTTGTTCTGCTAGCGAGGATAGTGGATGGGGTTGCCATTGCTCTTGCCGTTACTCTTACCCCTCTCTACATATCTGAGGTAGCACCGGCTGATATCAGAGGCCAATTGAACACTCTTACTCAGTTTGCTTGTTCTGGTGGAATGTTCTTGGCATACATCATGGTGTTCTCAATGTCCTTGGCGGATTCACCCAGTTGGAGACTCATGCTTGGAGTCATTTCTATTCCTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGAGTCATTTCTATTCCTTCTGTTGCTTACTTTTTGCTGGCTGTGTTTTACCTTCCTGAGTCTCCTAGGTGGCTTGTCAGCAAAGGCCGGCTACATGAGGCTGAAAAGGTTCTGAAAAGGCTTCGCGGTGCTGAAGATGTTTCAGGGGAATTGGCGTTGCTGGCGGAGGGTCTCAGTCCTGGGGGTGAAGCCACTTCCATAGAAGAGTATATGGTTGCCCCAGCTAATGAGATTCTTGTTAACCAGGAAGCAGCAAAAGATTATATCAAGTTATATGGTCCTAATGAGGGAGTTGCAATGGTTGCTCAGCCAGTGAATGGACAAGGTAGCTTTGCATCGCGTAGTATGTTGTCTCAGCAAGGAAGCTTTGGAACTCTGACTGGTGGTGGTCTTAAGGATCCTATTGTGAATCTCTTTGGAAGTTTGCATGAGAATACTCTCCCTGAGAGTGGAGGTTCACGCAGTATGCTAATTCATAATGCCAACAGTATCTTTGATACCAGTGACAACTTGCATGAGTCCAGTCCCTTTGGTACCAGTGACAACTTGCATGCTCCACTGATGTCATTCCAAGGGGGTGCTGGGGAGAAGGACAGGGCTTATGGATCTAAGGACATGTTAGGCATGAGGAGCACTAGCAGCCTGAGAAGTAATAGTAGTTTCTTTCATGGGACTGCTGTTGAAACACCCAAAAATACAAACATTGGTGGAGGTTGGCAGTTGGTGTATAAATCAGCTGATGGTGCTGTGGGTGGGAAAAGAGAAGGACTCCAAAGGGTTTATTTGCACGCAGATCCTGCTGCTGTGTCTCACTCTCAACATGTTTCATTTGTTTCAACTTCCGGCTATGACATACCGATAGATGGTGGCGAAGCTTTCCAAGCAGCTGCTCTTGTCAGCCAATCAGTTATAGGTACTCATGATTTGTTGCATTTGCCAGAAGTTGCAGCAAAGGGCCCAAAATGGAGAGGTCTGCTAGAACCAGGAGTCAAGCGTGCATTAATTGTTGGAATAGGACTTCAAATTCTTCAACAGGCTGCTGGCATAAATGGGTTTCTCTACTATGCTCCCCAGATTCTTGAGCAGGCAGGAGTAGGGGCTCTTTTATCAAACTTGGGCCTTAGTTCAGCCTCTTCTTCTTTTCTTGTAAATATTGTTACAACCTTCTGCATGCTTCCTTGTATAGGTCTTGCCATAAGACTCATGGATATTTCTGGCAGGAGGTCAATCATGCTGTACACAATACCCATTTTGATAGTTTGTCTCCTGGTACTAGTTATCAAGCAGTTCTTTGAGATCGATTCTGTCCTCGATGCAGCGATCAGTGCTGTTAGTGTTGTGGTTTATGAAAGTGTGTTCTGCATGGGGTTGGGCGTTATTCCGAACATCATATGTGCTGAAATCTTCCCAACAAATGTTCGCGGAATCTGCATTTCTTTGACTTCTCTTACATATTGGGGTTGCACCTTGATTGTCACTTTGATCTTCCCCTACTTGCTCCAGCTTCTTGGTCTCGCCGGTGTCTTTATATTATTTGTTGTTGGCTGCATCATTTCATGGATCTTTGTCTACTTGAAAGTTCCTGAAACAAAAGGCATGCCTTTAGAAGTTATTATTGAGTTTTTTGCTATTGGTGCAAAGCCTGGCACTGATCCTTCCACACTGGGAATCAAAGTTTGA 2433 0.4057 MMEVVIVAVAATLGNLLMGWDSSTIAAGMTYIKEEFDLDATLEGLIVSMSFITGTVVTIFSGTVCDLVGRRPMLITSSVMFFLSGLIMLWTPNVIVVLLARIVDGVAIALAVTLTPLYISEVAPADIRGQLNTLTQFACSGGMFLAYIMVFSMSLADSPSWRLMLGVISIPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVISIPSVAYFLLAVFYLPESPRWLVSKGRLHEAEKVLKRLRGAEDVSGELALLAEGLSPGGEATSIEEYMVAPANEILVNQEAAKDYIKLYGPNEGVAMVAQPVNGQGSFASRSMLSQQGSFGTLTGGGLKDPIVNLFGSLHENTLPESGGSRSMLIHNANSIFDTSDNLHESSPFGTSDNLHAPLMSFQGGAGEKDRAYGSKDMLGMRSTSSLRSNSSFFHGTAVETPKNTNIGGGWQLVYKSADGAVGGKREGLQRVYLHADPAAVSHSQHVSFVSTSGYDIPIDGGEAFQAAALVSQSVIGTHDLLHLPEVAAKGPKWRGLLEPGVKRALIVGIGLQILQQAAGINGFLYYAPQILEQAGVGALLSNLGLSSASSSFLVNIVTTFCMLPCIGLAIRLMDISGRRSIMLYTIPILIVCLLVLVIKQFFEIDSVLDAAISAVSVVVYESVFCMGLGVIPNIICAEIFPTNVRGICISLTSLTYWGCTLIVTLIFPYLLQLLGLAGVFILFVVGCIISWIFVYLKVPETKGMPLEVIIEFFAIGAKPGTDPSTLGIKV 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01160 810 PANTHER MAJOR FACILITATOR, SUGAR TRANSPORTER, MAJOR FACILITATOR SUPERFAMILY-RELATED 252 806 - -
Cca06g01160 810 PRINTS Sugar transporter signature 694 715 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca06g01160 810 PRINTS Sugar transporter signature 717 729 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca06g01160 810 PRINTS Sugar transporter signature 15 25 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca06g01160 810 PRINTS Sugar transporter signature 98 117 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca06g01160 810 SUPERFAMILY MFS general substrate transporter 7 172 IPR036259 -
Cca06g01160 810 PANTHER - 252 806 - -
Cca06g01160 810 Gene3D MFS general substrate transporter like domains 2 175 IPR036259 -
Cca06g01160 810 Pfam Sugar (and other) transporter 252 307 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cca06g01160 810 Pfam Sugar (and other) transporter 7 172 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cca06g01160 810 Pfam Sugar (and other) transporter 572 790 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cca06g01160 810 PANTHER MAJOR FACILITATOR, SUGAR TRANSPORTER, MAJOR FACILITATOR SUPERFAMILY-RELATED 1 172 - -
Cca06g01160 810 PANTHER - 1 172 - -
Cca06g01160 810 Gene3D MFS general substrate transporter like domains 559 795 IPR036259 -
Cca06g01160 810 Gene3D MFS general substrate transporter like domains 250 332 IPR036259 -
Cca06g01160 810 ProSiteProfiles Major facilitator superfamily (MFS) profile. 7 782 IPR020846 GO:0022857
Cca06g01160 810 SUPERFAMILY MFS general substrate transporter 253 787 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01160 Cca-Chr6 25991499 25995476 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01160 252 798 Organic Solute Cotransporters AT3G51490 50.780 7.19e-173 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01160 - - gmx:100789093 954.896
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01160 06 25991499 25995476 Cca06g01160 06 25991499 25995476 ECH
Cca06g01160 06 25991499 25995476 Cca11g00962 11 20498873 20504562 ECH
Cca04g00371 04 3738631 3740651 Cca06g01160 06 25991499 25995476 ECH
Cca07g00007 07 155483 161716 Cca06g01160 06 25991499 25995476 ECH