Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02215 ATGGATTCAAATATTCAAGACTTTATAGACACATGTAACTCTGACAACACCTGCAACCTCACCAATACCACCTCCATCTTAACCACTAGTGCTACCTCTTCCTCACCTTCTTCAACTTCCATCACCAACACCAGCAGCCGCTACGAGAACCAGAAGCGCCGTGACTGGAACACCTTCGGCCAATACCTCAAGAATCACCGTCCCCCTCTCTCCCTCTCCAGGTGCAGCGGTGCACATGTCCTTGAATTTCTAAGgtaCCTGGATCAATTTGGGAAGACCAAAGTGCACACACCGATCTGCCCCTTTTATGGTCACCCTAACCCTCCAGCACCATGTCCATGTCCTCTAAGGCAAGCTTGGGGGAGTCTTGACGCTCTCATAGGGCGTTTGCGTGCAGCTTTTGAGGAAAATGGAGGAAAACCTGAGGCAAATCCTTTTGGAGCTCGAGCTGTGAGACTCTACCTTCGTGAGGTTCGTGATTTGCAATCCAAAGCAAGAGGGATTAGCTATGAGAAGAAGAAACGGAAGCGTCCACAACCTCAGCAACAACCCATGCCGCTGCCTCATCATCCTCTTCCTCCTCCAGGTGCAAGTGCAACTCATTAA 606 0.4983 MDSNIQDFIDTCNSDNTCNLTNTTSILTTSATSSSPSSTSITNTSSRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQPQQQPMPLPHHPLPPPGASATH 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02215 201 MobiDBLite consensus disorder prediction 165 201 - -
Cca03g02215 201 MobiDBLite consensus disorder prediction 29 47 - -
Cca03g02215 201 PANTHER PROTEIN G1-LIKE2 1 186 IPR040222 -
Cca03g02215 201 MobiDBLite consensus disorder prediction 29 49 - -
Cca03g02215 201 Pfam ALOG domain 39 160 IPR006936 -
Cca03g02215 201 PANTHER G1-LIKE PROTEIN 1 186 - -
Cca03g02215 201 MobiDBLite consensus disorder prediction 181 195 - -
Cca03g02215 201 ProSiteProfiles ALOG domain profile. 47 174 IPR006936 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02215 Cca-Chr3 42913767 42915837 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02215 - - ccaj:109797167 345.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02215 03 42913767 42915837 Cca02g01600 02 34767871 34768654 ECH
Cca03g02215 03 42913767 42915837 Cca03g02215 03 42913767 42915837 ECH
Cca02g01004 02 26536547 26538350 Cca03g02215 03 42913767 42915837 ECH
Cca02g01733 02 36473506 36474865 Cca03g02215 03 42913767 42915837 ECH
Cca03g02215 03 42913767 42915837 Cca02g00070 02 1182598 1184951 PCT
Cca02g01004 02 26536547 26538350 Cca03g02215 03 42913767 42915837 PCT