Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01600 ATGGATTTGGTTTCGGAATCATCCAACGTTACAAAGCCCAGGTACAAGATGGAGAGTCCAAGCCCAAGCCCGAGCGCGAATCCAACGGCGGCAGCGTCGTCACCGTCTTCGGGTACTCCGAGCCGCTACGAGAACCAAAAGCGGCGAGACTGGAACACGTTCTGCCAGTACCTAAGGAACCACCGTCCTCCTCTCTCGCTGGCCCTGTGTAGCGGCGCGCACGTGCTGGAATTCCTCCACTACCTGGACCAGTTCGGGAAAACGAAGGTTCACAACCACCCGTGCCCGTTTTTCGGTCTCCCGAACCCTCCGGCGGCCTGCCCCTGCCCGCTCCGCCAGGCCTGGGGCAGCCTGGACGCCCTCATCGGCCGCCTCCGCGCCGCCTACGAGGAAAACGGCGGCAGGCCCGAGAGCAACCCCTTCGGCGCACGGGCCGTCAGGATTTACCTCCGCGACGTTCGCGACTTTCAGGCCAAGGCCAGAGGTCACTCCCGCTCCTACTTAATCAACATTCCCACAAAACCTATGTCTCACCACATCCCACAGGTGCTTTTGTCTCTCTACCAACACCCTTCAGATCACGCCCTTCAAAGATAG 597 0.6064 MDLVSESSNVTKPRYKMESPSPSPSANPTAAASSPSSGTPSRYENQKRRDWNTFCQYLRNHRPPLSLALCSGAHVLEFLHYLDQFGKTKVHNHPCPFFGLPNPPAACPCPLRQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRIYLRDVRDFQAKARGHSRSYLINIPTKPMSHHIPQVLLSLYQHPSDHALQR 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01600 198 ProSiteProfiles ALOG domain profile. 42 169 IPR006936 -
Cca02g01600 198 PANTHER PROTEIN G1-LIKE2 16 162 IPR040222 -
Cca02g01600 198 Pfam ALOG domain 35 155 IPR006936 -
Cca02g01600 198 PANTHER PROTEIN G1-LIKE9 16 162 - -
Cca02g01600 198 MobiDBLite consensus disorder prediction 1 42 - -
Cca02g01600 198 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01600 Cca-Chr2 34767871 34768654 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01600 - - gmx:100791424 277.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01004 02 26536547 26538350 Cca02g01600 02 34767871 34768654 ECH
Cca03g02215 03 42913767 42915837 Cca02g01600 02 34767871 34768654 ECH
Cca02g01733 02 36473506 36474865 Cca02g01600 02 34767871 34768654 ECH
Cca02g01600 02 34767871 34768654 Cca02g01600 02 34767871 34768654 ECH