Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01004 ATGGATTCAATTCAAGAATTTATGGAATCATGTCACTCTGAcatcaccaacaccgcaaccaccatcaccacctccaacaacaGCTTAGTTGGTAGCTCCAATTCCCCTTCTGCTTCTTCCACCACCACTAGCAGCCGCTATGAGAACCAAAAGCGCCGTGACTGGAACACCTTCGGCCAGTACCTCAAGAATCACCGACCCCCTCTCTCCCTCTCCAGGTGCAGCGGTGCACACGTCCTTGAATTTCTCAGGTACTTGGACCAGTTTGGGAAGACGAAAGTGCACACTCCGATCTGTCCCTTTTATGGGCACCCTAACCCTCCAGCTCCATGTCCATGCCCCCTGAGACAAGCCTGGGGTAGCCTCGATGCCCTCATAGGTCGTCTGAGGGCAGCTTTTGAGGAAAACGGAGGGAAACCAGAAACCAACCCTTTTGGAGCAAGAGCAGTGAGGCTCTACCTTCGTGAGGTTCGTGAACTTCAGTCCAAAGCAAGAGGAATCAGTTATGAGAAGAAGAAACGAAAGCGTccaccaccaccaacaccacaacaacaacaacaacaacaacaccaccatcaatcattgcctctacctcaccaccaccTGCCTCCTCCAGGTGCAACTCAATGA 630 0.4206 MDSIQEFMESCHSDITNTATTITTSNNSLVGSSNSPSASSTTTSSRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRELQSKARGISYEKKKRKRPPPPTPQQQQQQQHHHQSLPLPHHHLPPPGATQ 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01004 209 MobiDBLite consensus disorder prediction 24 50 - -
Cca02g01004 209 MobiDBLite consensus disorder prediction 24 46 - -
Cca02g01004 209 ProSiteProfiles ALOG domain profile. 46 173 IPR006936 -
Cca02g01004 209 PANTHER PROTEIN G1-LIKE2 1 209 IPR040222 -
Cca02g01004 209 Pfam ALOG domain 38 159 IPR006936 -
Cca02g01004 209 PANTHER G1-LIKE PROTEIN 1 209 - -
Cca02g01004 209 MobiDBLite consensus disorder prediction 164 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01004 Cca-Chr2 26536547 26538350 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01004 - - gmx:100527409 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01004 02 26536547 26538350 Cca02g01600 02 34767871 34768654 ECH
Cca02g01004 02 26536547 26538350 Cca02g01004 02 26536547 26538350 ECH
Cca02g01004 02 26536547 26538350 Cca03g02215 03 42913767 42915837 ECH
Cca02g01733 02 36473506 36474865 Cca02g01004 02 26536547 26538350 ECH
Cca03g03077 03 52204338 52205999 Cca02g01004 02 26536547 26538350 PCT
Cca02g01004 02 26536547 26538350 Cca03g02215 03 42913767 42915837 PCT