Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00757 ATGAGTTGGTCTGGAGGAGATTGGATGTGTGGTGCTTGCCAGCACATAAATTTCAAGAAGAGGGATGCATGCCAAAGTTGTGGATACCCCAAGTTTGGAGGCCCTGACCCTACAACCTACAGATACAACTGGTCTGAAGCCTTGGCAGGGGACTGGTATTGCACAGCTATGAACTGTGGAGCTCACAACTATGCCAGCAGATCAAGCTGCTATAGATGTGGTTCATTGAAAGATGGTTATTCTTGTAGATTTGGGGGAAACATGGATACCCCTGTAGGATATGCTTCTGATTGCAATTTTCCCCCAGGGTGGAAGACTGGTGACTGGATTTGCACTAGAATTGGGTGTGGAGTGCATAACTATGCCAGCAGGACAGAATGTTTCAAGTGCAAAACACCAAGAAATTATGGTGACGCAGACTAA 423 0.4634 MSWSGGDWMCGACQHINFKKRDACQSCGYPKFGGPDPTTYRYNWSEALAGDWYCTAMNCGAHNYASRSSCYRCGSLKDGYSCRFGGNMDTPVGYASDCNFPPGWKTGDWICTRIGCGVHNYASRTECFKCKTPRNYGDAD 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00757 140 PANTHER ZINC FINGER, RANBP2-TYPE-RELATED 1 137 - -
Cca03g00757 140 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
Cca03g00757 140 Gene3D - 1 35 - -
Cca03g00757 140 Gene3D - 43 79 - -
Cca03g00757 140 Gene3D - 96 137 - -
Cca03g00757 140 SMART zf_4 107 133 IPR001876 -
Cca03g00757 140 SMART zf_4 6 30 IPR001876 -
Cca03g00757 140 SMART zf_4 50 76 IPR001876 -
Cca03g00757 140 SUPERFAMILY Ran binding protein zinc finger-like 49 79 IPR036443 -
Cca03g00757 140 SUPERFAMILY Ran binding protein zinc finger-like 101 136 IPR036443 -
Cca03g00757 140 ProSiteProfiles Zinc finger RanBP2 type profile. 105 136 IPR001876 -
Cca03g00757 140 ProSiteProfiles Zinc finger RanBP2 type profile. 4 33 IPR001876 -
Cca03g00757 140 ProSitePatterns Zinc finger RanBP2-type signature. 52 73 IPR001876 -
Cca03g00757 140 Pfam Zn-finger in Ran binding protein and others 49 77 IPR001876 -
Cca03g00757 140 Pfam Zn-finger in Ran binding protein and others 105 134 IPR001876 -
Cca03g00757 140 ProSiteProfiles Zinc finger RanBP2 type profile. 48 79 IPR001876 -
Cca03g00757 140 PANTHER ZINC FINGER PROTEIN 1 137 - -
Cca03g00757 140 SUPERFAMILY Ran binding protein zinc finger-like 3 34 IPR036443 -
Cca03g00757 140 ProSitePatterns Zinc finger RanBP2-type signature. 109 130 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00757 Cca-Chr3 16252971 16254165 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00757 - - gmx:100792208 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00757 03 16252971 16254165 Cca11g00173 11 2098191 2100332 ECH
Cca03g00757 03 16252971 16254165 Cca03g00757 03 16252971 16254165 ECH
Cca11g02144 11 47289241 47290280 Cca03g00757 03 16252971 16254165 PCT
Cca03g00757 03 16252971 16254165 Cca11g02145 11 47297103 47298606 PCT