Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00173 ATGAGCAGACCAGGAGACTGGAACTGCAGGTCATGCCAGCACCTGAACTTTCAGAGGAGAGATTCGTGCCAGCGATGTGGGGACTCAAAATATGGAGACAGAGTTGATTTTGGGGGGTTTGGAGGAAGAGGAGGGTCTTCATTTGGGTTAACAGGGTCAGATGTTCGCCCTGGTGACTGGTACTGTGCTGCTGCTAACTGTGGTGCACACAACTTTGCAAGCCGCTCAAGCTGCTTCAAGTGTGGTGCTTTCAAGGATGACTTGGCTGGAGGCTACAGCAGTGACATATTGCGCTCAAGAGCTTTTGGTGGCAGTGGAAGACCTGGATGGAAATCTGGTGACTGGATATGCAGCAGATCAGGATGCAATGAACACAACTTTGCTAGCAGAATGGAGTGTTTTAAATGCAGTGCTCCAAGGGACACGTACTAG 432 0.5023 MSRPGDWNCRSCQHLNFQRRDSCQRCGDSKYGDRVDFGGFGGRGGSSFGLTGSDVRPGDWYCAAANCGAHNFASRSSCFKCGAFKDDLAGGYSSDILRSRAFGGSGRPGWKSGDWICSRSGCNEHNFASRMECFKCSAPRDTY 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00173 143 ProSitePatterns Zinc finger RanBP2-type signature. 60 81 IPR001876 -
Cca11g00173 143 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
Cca11g00173 143 SUPERFAMILY Ran binding protein zinc finger-like 51 86 IPR036443 -
Cca11g00173 143 PANTHER ZINC FINGER PROTEIN 1 142 - -
Cca11g00173 143 ProSitePatterns Zinc finger RanBP2-type signature. 115 136 IPR001876 -
Cca11g00173 143 PANTHER OS02G0203700 PROTEIN 1 142 - -
Cca11g00173 143 SUPERFAMILY Ran binding protein zinc finger-like 2 33 IPR036443 -
Cca11g00173 143 SUPERFAMILY Ran binding protein zinc finger-like 105 141 IPR036443 -
Cca11g00173 143 ProSiteProfiles Zinc finger RanBP2 type profile. 56 87 IPR001876 -
Cca11g00173 143 Pfam Zn-finger in Ran binding protein and others 3 28 IPR001876 -
Cca11g00173 143 Pfam Zn-finger in Ran binding protein and others 56 83 IPR001876 -
Cca11g00173 143 Pfam Zn-finger in Ran binding protein and others 111 140 IPR001876 -
Cca11g00173 143 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Cca11g00173 143 Gene3D - 107 142 - -
Cca11g00173 143 Gene3D - 51 87 - -
Cca11g00173 143 Gene3D - 2 32 - -
Cca11g00173 143 ProSiteProfiles Zinc finger RanBP2 type profile. 111 142 IPR001876 -
Cca11g00173 143 SMART zf_4 113 139 IPR001876 -
Cca11g00173 143 SMART zf_4 58 84 IPR001876 -
Cca11g00173 143 SMART zf_4 5 29 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00173 Cca-Chr11 2098191 2100332 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00173 - - gmx:100499847 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02144 11 47289241 47290280 Cca11g00173 11 2098191 2100332 ECH
Cca03g00757 03 16252971 16254165 Cca11g00173 11 2098191 2100332 ECH
Cca11g00173 11 2098191 2100332 Cca11g00173 11 2098191 2100332 ECH